Literature DB >> 15960810

Histone modifications: from genome-wide maps to functional insights.

Fred van Leeuwen1, Bas van Steensel.   

Abstract

A large number of histone modifications has been implicated in the regulation of gene expression. Together, these modifications have the potential to form a complex combinatorial regulatory code. Genome-wide mapping approaches provide new opportunities to decipher this code, but they may suffer from systematic biases. Integration of datasets and improved technologies will provide the way forward.

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Year:  2005        PMID： 15960810      PMCID： PMC1175962          DOI： 10.1186/gb-2005-6-6-113

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  35 in total

Review 1.  Bromodomain: an acetyl-lysine binding domain.

Authors:  Lei Zeng; Ming Ming Zhou
Journal:  FEBS Lett       Date:  2002-02-20       Impact factor: 4.124

2.  Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin.

Authors:  N Suka; Y Suka; A A Carmen; J Wu; M Grunstein
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

3.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

Review 4.  Signaling network model of chromatin.

Authors:  Stuart L Schreiber; Bradley E Bernstein
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

5.  Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3.

Authors:  Andrew A Carmen; Lisa Milne; Michael Grunstein
Journal:  J Biol Chem       Date:  2001-11-19       Impact factor: 5.157

6.  Chromatin profiling using targeted DNA adenine methyltransferase.

Authors:  B van Steensel; J Delrow; S Henikoff
Journal:  Nat Genet       Date:  2001-03       Impact factor: 38.330

7.  Genomic characterization reveals a simple histone H4 acetylation code.

Authors:  Michael F Dion; Steven J Altschuler; Lani F Wu; Oliver J Rando
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-28       Impact factor: 11.205

8.  Requirement of Hos2 histone deacetylase for gene activity in yeast.

Authors:  Amy Wang; Siavash K Kurdistani; Michael Grunstein
Journal:  Science       Date:  2002-11-15       Impact factor: 47.728

9.  Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases.

Authors:  Daniel Robyr; Yuko Suka; Ioannis Xenarios; Siavash K Kurdistani; Amy Wang; Noriyuki Suka; Michael Grunstein
Journal:  Cell       Date:  2002-05-17       Impact factor: 41.582

10.  Genome-wide binding map of the histone deacetylase Rpd3 in yeast.

Authors:  Siavash K Kurdistani; Daniel Robyr; Saeed Tavazoie; Michael Grunstein
Journal:  Nat Genet       Date:  2002-06-24       Impact factor: 38.330
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  23 in total

Review 1.  Applying whole-genome studies of epigenetic regulation to study human disease.

Authors:  J D Lieb; S Beck; M L Bulyk; P Farnham; N Hattori; S Henikoff; X S Liu; K Okumura; K Shiota; T Ushijima; J M Greally
Journal:  Cytogenet Genome Res       Date:  2006       Impact factor: 1.636

2.  Epigenetic Changes in Alveolar Type II Lung Cells of A/J Mice Following Intranasal Treatment with Lipopolysaccharide.

Authors:  Christopher L Seiler; Jung Min Song; Jenna Fernandez; Juan E Abrahante; Thomas J Y Kono; Yue Chen; Yanan Ren; Fekadu Kassie; Natalia Y Tretyakova
Journal:  Chem Res Toxicol       Date:  2019-04-16       Impact factor: 3.739

3.  Histone deacetylase inhibitors induce growth arrest and differentiation in uveal melanoma.

Authors:  Solange Landreville; Olga A Agapova; Katie A Matatall; Zachary T Kneass; Michael D Onken; Ryan S Lee; Anne M Bowcock; J William Harbour
Journal:  Clin Cancer Res       Date:  2011-10-28       Impact factor: 12.531

4.  cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila.

Authors:  Tzu-Hsien Yang; Chung-Ching Wang; Po-Cheng Hung; Wei-Sheng Wu
Journal:  BMC Syst Biol       Date:  2014-12-08

5.  Histone H3 lysine 79 methyltransferase Dot1 is required for immortalization by MLL oncogenes.

Authors:  Ming-Jin Chang; Hongyu Wu; Nicholas J Achille; Mary Rose Reisenauer; Chau-Wen Chou; Nancy J Zeleznik-Le; Charles S Hemenway; Wenzheng Zhang
Journal:  Cancer Res       Date:  2010-12-15       Impact factor: 12.701

6.  Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast.

Authors:  Catherine B Millar; Feng Xu; Kangling Zhang; Michael Grunstein
Journal:  Genes Dev       Date:  2006-03-15       Impact factor: 11.361

7.  Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).

Authors:  Paul G Giresi; Jason D Lieb
Journal:  Methods       Date:  2009-03-18       Impact factor: 3.608

8.  HHMD: the human histone modification database.

Authors:  Yan Zhang; Jie Lv; Hongbo Liu; Jiang Zhu; Jianzhong Su; Qiong Wu; Yunfeng Qi; Fang Wang; Xia Li
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971

9.  Evidence for sequence biases associated with patterns of histone methylation.

Authors:  Zhong Wang; Huntington F Willard
Journal:  BMC Genomics       Date:  2012-08-02       Impact factor: 3.969

10.  Shape-based alignment of genomic landscapes in multi-scale resolution.

Authors:  Hiroki Ashida; Kiyoshi Asai; Michiaki Hamada
Journal:  Nucleic Acids Res       Date:  2012-05-04       Impact factor: 16.971
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