Literature DB >> 15956979

The catalytic diversity of RNAs.

Martha J Fedor1, James R Williamson.   

Abstract

The natural RNA enzymes catalyse phosphate-group transfer and peptide-bond formation. Initially, metal ions were proposed to supply the chemical versatility that nucleotides lack. In the ensuing decades, structural and mechanistic studies have substantially altered this initial viewpoint. Whereas self-splicing ribozymes clearly rely on essential metal-ion cofactors, self-cleaving ribozymes seem to use nucleotide bases for their catalytic chemistry. Despite the overall differences in chemical features, both RNA and protein enzymes use similar catalytic strategies.

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Year:  2005        PMID: 15956979     DOI: 10.1038/nrm1647

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  109 in total

1.  Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes.

Authors:  Dana J Ruminski; Chiu-Ho T Webb; Nathan J Riccitelli; Andrej Lupták
Journal:  J Biol Chem       Date:  2011-10-12       Impact factor: 5.157

2.  Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.

Authors:  Zhenjiang Xu; David H Mathews
Journal:  Bioinformatics       Date:  2010-12-30       Impact factor: 6.937

3.  Crystal structure of a DNA catalyst.

Authors:  Almudena Ponce-Salvatierra; Katarzyna Wawrzyniak-Turek; Ulrich Steuerwald; Claudia Höbartner; Vladimir Pena
Journal:  Nature       Date:  2016-01-06       Impact factor: 49.962

4.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

Review 5.  Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction.

Authors:  Barbara L Golden
Journal:  Biochemistry       Date:  2011-10-17       Impact factor: 3.162

6.  The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning.

Authors:  Eric L Christian; Kari M J Smith; Nicholas Perera; Michael E Harris
Journal:  RNA       Date:  2006-07-05       Impact factor: 4.942

7.  Extraordinary rates of transition metal ion-mediated ribozyme catalysis.

Authors:  Manami Roychowdhury-Saha; Donald H Burke
Journal:  RNA       Date:  2006-08-15       Impact factor: 4.942

8.  Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme.

Authors:  M Duane Smith; Richard A Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-26       Impact factor: 11.205

Review 9.  Structured non-coding RNAs and the RNP Renaissance.

Authors:  J Robert Hogg; Kathleen Collins
Journal:  Curr Opin Chem Biol       Date:  2008-10-23       Impact factor: 8.822

Review 10.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

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