Literature DB >> 15953928

Whither or wither geomicrobiology in the era of 'community metagenomics'.

Ronald S Oremland1, Douglas G Capone, John F Stolz, Jed Fuhrman.   

Abstract

Molecular techniques are valuable tools that can improve our understanding of the structure of microbial communities. They provide the ability to probe for life in all niches of the biosphere, perhaps even supplanting the need to cultivate microorganisms or to conduct ecophysiological investigations. However, an overemphasis and strict dependence on such large information-driven endeavours as environmental metagenomics could overwhelm the field, to the detriment of microbial ecology. We now call for more balanced, hypothesis-driven research efforts that couple metagenomics with classic approaches.

Mesh:

Year:  2005        PMID: 15953928     DOI: 10.1038/nrmicro1182

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  11 in total

Review 1.  Overview of the gastrointestinal microbiota.

Authors:  Vincent B Young; Thomas M Schmidt
Journal:  Adv Exp Med Biol       Date:  2008       Impact factor: 2.622

Review 2.  Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain.

Authors:  Philippe C Baveye; Wilfred Otten; Alexandra Kravchenko; María Balseiro-Romero; Éléonore Beckers; Maha Chalhoub; Christophe Darnault; Thilo Eickhorst; Patricia Garnier; Simona Hapca; Serkan Kiranyaz; Olivier Monga; Carsten W Mueller; Naoise Nunan; Valérie Pot; Steffen Schlüter; Hannes Schmidt; Hans-Jörg Vogel
Journal:  Front Microbiol       Date:  2018-08-27       Impact factor: 5.640

Review 3.  The expanding world of methylotrophic metabolism.

Authors:  Ludmila Chistoserdova; Marina G Kalyuzhnaya; Mary E Lidstrom
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

4.  The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation.

Authors:  Jack A Gilbert; Dawn Field; Paul Swift; Simon Thomas; Denise Cummings; Ben Temperton; Karen Weynberg; Susan Huse; Margaret Hughes; Ian Joint; Paul J Somerfield; Martin Mühling
Journal:  PLoS One       Date:  2010-11-29       Impact factor: 3.240

5.  The ArsR repressor mediates arsenite-dependent regulation of arsenate respiration and detoxification operons of Shewanella sp. strain ANA-3.

Authors:  Julie N Murphy; Chad W Saltikov
Journal:  J Bacteriol       Date:  2009-08-28       Impact factor: 3.490

6.  Variation in prokaryotic community composition as a function of resource availability in tidal creek sediments.

Authors:  Jennifer W Edmonds; Nathanial B Weston; Samantha B Joye; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

Review 7.  Molecular approaches: advantages and artifacts in assessing bacterial diversity.

Authors:  Daniela Santos Pontes; Cláudia Iracema Lima-Bittencourt; Edmar Chartone-Souza; Andréa Maria Amaral Nascimento
Journal:  J Ind Microbiol Biotechnol       Date:  2007-05-03       Impact factor: 4.258

8.  Community structure and activity of a highly dynamic and nutrient-limited hypersaline microbial mat in Um Alhool Sabkha, Qatar.

Authors:  Roda Al-Thani; Mohammad A A Al-Najjar; Abdul Munem Al-Raei; Tim Ferdelman; Nguyen M Thang; Ismail Al Shaikh; Mehsin Al-Ansi; Dirk de Beer
Journal:  PLoS One       Date:  2014-03-21       Impact factor: 3.240

9.  Diversity of cultivable methane-oxidizing bacteria in microsites of a rice paddy field: investigation by cultivation method and fluorescence in situ hybridization (FISH).

Authors:  Dayéri Dianou; Chihoko Ueno; Takuya Ogiso; Makoto Kimura; Susumu Asakawa
Journal:  Microbes Environ       Date:  2012-03-23       Impact factor: 2.912

10.  An application of statistics to comparative metagenomics.

Authors:  Beltran Rodriguez-Brito; Forest Rohwer; Robert A Edwards
Journal:  BMC Bioinformatics       Date:  2006-03-20       Impact factor: 3.169

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