Literature DB >> 15945774

Charge transfer in DNA: hole charge is confined to a single base pair due to solvation effects.

Alexander A Voityuk1.   

Abstract

We include solvation effects in tight-binding Hamiltonians for hole states in DNA. The corresponding linear-response parameters are derived from accurate estimates of solvation energy calculated for several hole charge distributions in DNA stacks. Two models are considered: (A) the correction to a diagonal Hamiltonian matrix element depends only on the charge localized on the corresponding site and (B) in addition to this term, the reaction field due to adjacent base pairs is accounted for. We show that both schemes give very similar results. The effects of the polar medium on the hole distribution in DNA are studied. We conclude that the effects of polar surroundings essentially suppress charge delocalization in DNA, and hole states in (GC)(n) sequences are localized on individual guanines.

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Year:  2005        PMID: 15945774     DOI: 10.1063/1.1924551

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

1.  Impact of a single base pair substitution on the charge transfer rate along short DNA hairpins.

Authors:  Nicolas Renaud; Yuri A Berlin; Mark A Ratner
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

2.  Deep-hole transfer leads to ultrafast charge migration in DNA hairpins.

Authors:  Nicolas Renaud; Michelle A Harris; Arunoday P N Singh; Yuri A Berlin; Mark A Ratner; Michael R Wasielewski; Frederick D Lewis; Ferdinand C Grozema
Journal:  Nat Chem       Date:  2016-08-15       Impact factor: 24.427

3.  Single-step charge transport through DNA over long distances.

Authors:  Joseph C Genereux; Stephanie M Wuerth; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2011-02-24       Impact factor: 15.419

Review 4.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

5.  Photoexcitation of dinucleoside radical cations: a time-dependent density functional study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2006-11-30       Impact factor: 2.991

6.  Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations.

Authors:  Alessandro Nicola Nardi; Alessio Olivieri; Marco D'Abramo
Journal:  J Phys Chem B       Date:  2022-06-07       Impact factor: 3.466

7.  Charge transport in a DNA model with solvent interaction.

Authors:  H Ngoubi; G H Ben-Bolie; T C Kofané
Journal:  J Biol Phys       Date:  2018-07-03       Impact factor: 1.365

Review 8.  Theoretical Modeling of Redox Potentials of Biomolecules.

Authors:  Cheng Giuseppe Chen; Alessandro Nicola Nardi; Andrea Amadei; Marco D'Abramo
Journal:  Molecules       Date:  2022-02-05       Impact factor: 4.411

  8 in total

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