Literature DB >> 15941293

Infrared fingerprint spectroscopy and theoretical studies of potassium ion tagged amino acids and peptides in the gas phase.

Nick C Polfer1, Béla Paizs, Lavina C Snoek, Isabelle Compagnon, Sándor Suhai, Gerard Meijer, Gert von Helden, Jos Oomens.   

Abstract

Infrared multiple-photon dissociation spectroscopy is effected on the K(+) tagged aromatic amino acids tyrosine and phenylalanine, as well as the K(+) tagged peptides bradykinin fragment 1-5 and [Leu]-enkephalin. The fingerprint (800-1800 cm(-1)) infrared spectra of these species are compared to density-functional theory (DFT) calculated spectra to determine whether the complex is in the charge solvation (CS) or salt bridge (SB) (i.e. zwitterionic) configuration. For the aromatic amino acids the CS structure is favored and the tridentate N/O/ring structure is found to be the preferred binding geometry for K(+). The experimental and theoretical evidence for bradykinin fragment 1-5 tagged with K(+) suggests that the SB structure is favored; the calculations indicate a head-to-tail looped structure stabilized by a salt bridge between the protonated guanidine group and the deprotonated C-terminus, which allows K(+) to sit in a binding pocket with five C=O electrostatic interactions. For K(+) tagged [Leu]-enkephalin the spectroscopic evidence is not as clear. While the calculations clearly favor a CS structure and the observation of a weak carboxylic acid C=O stretching band in the infrared spectrum matches this finding, the prominence of a band at 1600 cm(-1) renders the analysis more ambiguous, and hence the presence of some salt bridge ions cannot be excluded. Another striking feature in the [Leu]-enkephalin spectrum is the high infrared activity of the tyrosine side-chain modes, which can be clearly identified from comparison to the [Tyr + K](+) experimental spectrum, but which is not reproduced by the DFT calculations.

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Year:  2005        PMID: 15941293     DOI: 10.1021/ja050858u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Use of 157-nm photodissociation to probe structures of y- and b-type ions produced in collision-induced dissociation of peptide ions.

Authors:  Liangyi Zhang; James P Reilly
Journal:  J Am Soc Mass Spectrom       Date:  2008-02-02       Impact factor: 3.109

2.  Observation of zwitterion formation in the gas-phase H/D-exchange with CH(3)OD: solution-phase structures in the gas phase.

Authors:  Nick C Polfer; Robert C Dunbar; Jos Oomens
Journal:  J Am Soc Mass Spectrom       Date:  2006-12-14       Impact factor: 3.109

3.  IRPD spectroscopy and ensemble measurements: effects of different data acquisition and analysis methods.

Authors:  James S Prell; Jeremy T O'Brien; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-25       Impact factor: 3.109

4.  Integration of High-Resolution Mass Spectrometry with Cryogenic Ion Vibrational Spectroscopy.

Authors:  Fabian S Menges; Evan H Perez; Sean C Edington; Chinh H Duong; Nan Yang; Mark A Johnson
Journal:  J Am Soc Mass Spectrom       Date:  2019-06-10       Impact factor: 3.109

5.  Infrared spectroscopy of cationized arginine in the gas phase: direct evidence for the transition from nonzwitterionic to zwitterionic structure.

Authors:  Matthew F Bush; Jeremy T O'Brien; James S Prell; Richard J Saykally; Evan R Williams
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

6.  Dissociations of complexes between monovalent metal ions and aromatic amino acid or histidine.

Authors:  Tamer Shoeib; Junfang Zhao; Houssain Ei Aribi; Alan C Hopkinson; K W Michael Siu
Journal:  J Am Soc Mass Spectrom       Date:  2012-12-13       Impact factor: 3.109

7.  Structure of sodiated octa-glycine: IRMPD spectroscopy and molecular modeling.

Authors:  David Semrouni; O Petru Balaj; Florent Calvo; Catarina F Correia; Carine Clavaguéra; Gilles Ohanessian
Journal:  J Am Soc Mass Spectrom       Date:  2010-02-01       Impact factor: 3.109

8.  Triuret as a potential hypokalemic agent: Structure characterization of triuret and triuret-alkali metal adducts by mass spectrometric techniques.

Authors:  Sergiu P Palii; Cesar S Contreras; Jeffrey D Steill; Stela S Palii; Jos Oomens; John R Eyler
Journal:  Arch Biochem Biophys       Date:  2010-04-03       Impact factor: 4.013

9.  Competing noncovalent host-guest interactions and H/D exchange: reactions of benzyloxycarbonyl-proline glycine dipeptide variants with ND3.

Authors:  Mahsan Miladi; Abayomi D Olaitan; Behrooz Zekavat; Touradj Solouki
Journal:  J Am Soc Mass Spectrom       Date:  2015-08-21       Impact factor: 3.109

10.  Infrared Multiple Photon Dissociation Spectroscopy of Cationized Canavanine: Side-Chain Substitution Influences Gas-Phase Zwitterion Formation.

Authors:  Zachary M Smith; Vincent Steinmetz; Jonathan Martens; Jos Oomens; John C Poutsma
Journal:  Int J Mass Spectrom       Date:  2017-09-04       Impact factor: 1.986

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