Literature DB >> 15937491

TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape.

Yin Chun Lin1, Wai S Choi, Jay D Gralla.   

Abstract

DNA helicases open the duplex during DNA replication, repair and transcription. However, RNA polymerase II is the only member of its family with this requirement; RNA polymerases I and III and bacterial RNA polymerases open DNA without a helicase. In this report, characterization of XPB mutants indicates that its helicase activity is not used for RNA polymerase II promoter opening, which is instead driven by its ATPase activity. The mutants have parallels in sigma(54) bacterial transcription and this suggests a similar mode of opening DNA for both RNA polymerases, involving ATP-dependent enzyme conformational changes. Promoter escape is defective in these XPB mutants, suggesting that the XPB helicase acts as an ATP-driven motor to reorganize the tightly wrapped multiprotein eukaryotic preinitiation complex during the remodeling that precedes elongation and the coupling to RNA processing events.

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Year:  2005        PMID: 15937491     DOI: 10.1038/nsmb949

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  38 in total

1.  A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase.

Authors:  Patricia C Burrows; Nicolas Joly; Martin Buck
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

2.  Single-stranded DNA binding activity of XPBI, but not XPBII, from Sulfolobus tokodaii causes double-stranded DNA melting.

Authors:  Xiaoqing Ma; Ye Hong; Wenyuan Han; Duohong Sheng; Jinfeng Ni; Guihua Hou; Yulong Shen
Journal:  Extremophiles       Date:  2010-12-05       Impact factor: 2.395

3.  The TFIIB tip domain couples transcription initiation to events involved in RNA processing.

Authors:  Khiem Tran; Jay D Gralla
Journal:  J Biol Chem       Date:  2010-09-29       Impact factor: 5.157

4.  A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex.

Authors:  Gail Miller; Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2006-07-02       Impact factor: 15.369

5.  Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.

Authors:  Caroline A Davis; Craig A Bingman; Robert Landick; M Thomas Record; Ruth M Saecker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

6.  Engineered interfaces of an AAA+ ATPase reveal a new nucleotide-dependent coordination mechanism.

Authors:  Nicolas Joly; Martin Buck
Journal:  J Biol Chem       Date:  2010-03-02       Impact factor: 5.157

7.  Tripartite DNA Lesion Recognition and Verification by XPC, TFIIH, and XPA in Nucleotide Excision Repair.

Authors:  Chia-Lung Li; Filip M Golebiowski; Yuki Onishi; Nadine L Samara; Kaoru Sugasawa; Wei Yang
Journal:  Mol Cell       Date:  2015-09-17       Impact factor: 17.970

8.  ARCH domain of XPD, an anchoring platform for CAK that conditions TFIIH DNA repair and transcription activities.

Authors:  Wassim Abdulrahman; Izarn Iltis; Laura Radu; Cathy Braun; Anne Maglott-Roth; Christophe Giraudon; Jean-Marc Egly; Arnaud Poterszman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

9.  Comparative analysis of activator-Esigma54 complexes formed with nucleotide-metal fluoride analogues.

Authors:  Patricia C Burrows; Nicolas Joly; B Tracy Nixon; Martin Buck
Journal:  Nucleic Acids Res       Date:  2009-06-24       Impact factor: 16.971

10.  The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins.

Authors:  Nan Zhang; Nicolas Joly; Patricia C Burrows; Milija Jovanovic; Siva R Wigneshweraraj; Martin Buck
Journal:  Nucleic Acids Res       Date:  2009-08-19       Impact factor: 16.971

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