Literature DB >> 15911571

A new reversion assay for measuring all possible base pair substitutions in Saccharomyces cerevisiae.

Teresa-Marie Williams1, Rebecca M Fabbri, Jason W Reeves, Gray F Crouse.   

Abstract

A TRP5-based reversion system that allows the rates of all possible base pair substitutions to be measured when the TRP5 locus is in both orientations relative to a defined origin of replication has been developed. This system should be useful for a wide variety of mutation and repair studies in yeast.

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Year:  2005        PMID： 15911571      PMCID： PMC1451166          DOI： 10.1534/genetics.105.042697

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  22 in total

1.  The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae.

Authors:  A M Deshpande; C S Newlon
Journal:  Mol Cell Biol       Date:  1992-10       Impact factor: 4.272

2.  The role of mismatch repair in the prevention of base pair mutations in Saccharomyces cerevisiae.

Authors:  M C Earley; G F Crouse
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

3.  Inactivation of OGG1 increases the incidence of G . C-->T . A transversions in Saccharomyces cerevisiae: evidence for endogenous oxidative damage to DNA in eukaryotic cells.

Authors:  D Thomas; A D Scot; R Barbey; M Padula; S Boiteux
Journal:  Mol Gen Genet       Date:  1997-03-26

4.  Base analog N6-hydroxylaminopurine mutagenesis in Escherichia coli: genetic control and molecular specificity.

Authors:  Y I Pavlov; V V Suslov; P V Shcherbakova; T A Kunkel; A Ono; A Matsuda; R M Schaaper
Journal:  Mutat Res       Date:  1996-10-25       Impact factor: 2.433

5.  Specificity of mutations induced by methyl methanesulfonate in mismatch repair-deficient human cancer cell lines.

Authors:  W E Glaab; K R Tindall; T R Skopek
Journal:  Mutat Res       Date:  1999-06-30       Impact factor: 2.433

6.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

7.  Repair of oxidatively damaged guanine in Saccharomyces cerevisiae by an alternative pathway.

Authors:  S D Bruner; H M Nash; W S Lane; G L Verdine
Journal:  Curr Biol       Date:  1998-03-26       Impact factor: 10.834

8.  Base analog 6-N-hydroxylaminopurine mutagenesis in the yeast Saccharomyces cerevisiae is controlled by replicative DNA polymerases.

Authors:  P V Shcherbakova; V N Noskov; M R Pshenichnov; Y I Pavlov
Journal:  Mutat Res       Date:  1996-07-10       Impact factor: 2.433

9.  Spontaneous mutation, oxidative DNA damage, and the roles of base and nucleotide excision repair in the yeast Saccharomyces cerevisiae.

Authors:  A D Scott; M Neishabury; D H Jones; S H Reed; S Boiteux; R Waters
Journal:  Yeast       Date:  1999-02       Impact factor: 3.239

10.  Mutagenic specificity of the base analog 6-N-hydroxylaminopurine in the URA3 gene of the yeast Saccharomyces cerevisiae.

Authors:  P V Shcherbakova; Y I Pavlov
Journal:  Mutagenesis       Date:  1993-09       Impact factor: 3.000
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  8 in total

1.  Mismatch repair-dependent mutagenesis in nondividing cells.

Authors:  Gina P Rodriguez; Nina V Romanova; Gaobin Bao; N Cynthia Rouf; Yoke Wah Kow; Gray F Crouse
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

Review 2.  Non-canonical actions of mismatch repair.

Authors:  Gray F Crouse
Journal:  DNA Repair (Amst)       Date:  2015-12-02

Review 3.  Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.

Authors:  Hannah L Klein; Giedrė Bačinskaja; Jun Che; Anais Cheblal; Rajula Elango; Anastasiya Epshtein; Devon M Fitzgerald; Belén Gómez-González; Sharik R Khan; Sandeep Kumar; Bryan A Leland; Léa Marie; Qian Mei; Judith Miné-Hattab; Alicja Piotrowska; Erica J Polleys; Christopher D Putnam; Elina A Radchenko; Anissia Ait Saada; Cynthia J Sakofsky; Eun Yong Shim; Mathew Stracy; Jun Xia; Zhenxin Yan; Yi Yin; Andrés Aguilera; Juan Lucas Argueso; Catherine H Freudenreich; Susan M Gasser; Dmitry A Gordenin; James E Haber; Grzegorz Ira; Sue Jinks-Robertson; Megan C King; Richard D Kolodner; Andrei Kuzminov; Sarah Ae Lambert; Sang Eun Lee; Kyle M Miller; Sergei M Mirkin; Thomas D Petes; Susan M Rosenberg; Rodney Rothstein; Lorraine S Symington; Pawel Zawadzki; Nayun Kim; Michael Lisby; Anna Malkova
Journal:  Microb Cell       Date:  2019-01-07

4.  Replicative DNA polymerase δ but not ε proofreads errors in Cis and in Trans.

Authors:  Carrie L Flood; Gina P Rodriguez; Gaobin Bao; Arthur H Shockley; Yoke Wah Kow; Gray F Crouse
Journal:  PLoS Genet       Date:  2015-03-05       Impact factor: 5.917

5.  Transformation with oligonucleotides creating clustered changes in the yeast genome.

Authors:  Gina P Rodriguez; Joseph B Song; Gray F Crouse
Journal:  PLoS One       Date:  2012-08-14       Impact factor: 3.240

6.  In vivo bypass of 8-oxodG.

Authors:  Gina P Rodriguez; Joseph B Song; Gray F Crouse
Journal:  PLoS Genet       Date:  2013-08-01       Impact factor: 5.917

7.  Oxidative damage and mutagenesis in Saccharomyces cerevisiae: genetic studies of pathways affecting replication fidelity of 8-oxoguanine.

Authors:  Arthur H Shockley; David W Doo; Gina P Rodriguez; Gray F Crouse
Journal:  Genetics       Date:  2013-07-26       Impact factor: 4.562

8.  Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma.

Authors:  Marian F Laughery; Alexander J Brown; Kaitlynne A Bohm; Smitha Sivapragasam; Haley S Morris; Mila Tchmola; Angelica D Washington; Debra Mitchell; Stephen Mather; Ewa P Malc; Piotr A Mieczkowski; Steven A Roberts; John J Wyrick
Journal:  Cell Rep       Date:  2020-11-17       Impact factor: 9.423
  8 in total

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