Literature DB >> 15910044

Structure and ultrafast dynamics of liquid water: a quantum mechanics/molecular mechanics molecular dynamics simulations study.

Demetrios Xenides1, Bernhard R Randolf, Bernd M Rode.   

Abstract

A quantum mechanics/molecular mechanics molecular dynamics simulation was performed for liquid water to investigate structural and dynamical properties of this peculiar liquid. The most important region containing a central reference molecule and all nearest surrounding molecules (first coordination shell) was treated by Hartree-Fock (HF), post-Hartree-Fock [second-order Moller-Plesset perturbation theory (MP2)], and hybrid density functional B3LYP [Becke's three parameter functional (B3) with the correlation functional of Lee, Yang, and Parr (LYP)] methods. In addition, another HF-level simulation (2HF) included the full second coordination shell. Site to site interactions between oxygen-oxygen, oxygen-hydrogen, and hydrogen-hydrogen atoms of all ab initio methods were compared to experimental data. The absence of a second peak and the appearance of a shoulder instead in the gO-O graph obtained from the 2HF simulation is notable, as this feature has been observed so far only for pressurized or heated water. Dynamical data show that the 2HF procedure compensates some of the deficiency of the HF one-shell simulation, reducing the difference between correlated (MP2) and HF results. B3LYP apparently leads to too rigid structures and thus to an artificial slow down of the dynamics.

Entities:  

Year:  2005        PMID: 15910044     DOI: 10.1063/1.1888465

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Correlation between biological activity and binding energy in systems of integrin with cyclic RGD-containing binders: a QM/MM molecular dynamics study.

Authors:  Mingli Xiang; Yuchun Lin; Gu He; Lijuan Chen; Mingli Yang; Shengyong Yang; Yirong Mo
Journal:  J Mol Model       Date:  2012-06-27       Impact factor: 1.810

2.  Theoretical study of HOCl-catalyzed keto-enol tautomerization of β-cyclopentanedione in an explicit water environment.

Authors:  Cassian D'Cunha; Alexander N Morozov; David C Chatfield
Journal:  J Phys Chem A       Date:  2013-08-22       Impact factor: 2.781

3.  Computational study of the cerium(III) ion in aqueous environment.

Authors:  Oliver M D Lutz; Thomas S Hofer; Bernhard R Randolf; Bernd M Rode
Journal:  Chem Phys Lett       Date:  2012-06-29       Impact factor: 2.328

4.  Hydration of trivalent lanthanum revisited - An ab initio QMCF-MD approach.

Authors:  Oliver M D Lutz; Thomas S Hofer; Bernhard R Randolf; Bernd M Rode
Journal:  Chem Phys Lett       Date:  2012-05-21       Impact factor: 2.328

5.  A Comparison of QM/MM Simulations with and without the Drude Oscillator Model Based on Hydration Free Energies of Simple Solutes.

Authors:  Gerhard König; Frank C Pickard; Jing Huang; Walter Thiel; Alexander D MacKerell; Bernard R Brooks; Darrin M York
Journal:  Molecules       Date:  2018-10-19       Impact factor: 4.411

  5 in total

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