Literature DB >> 15908034

Genetical genomics in humans and model organisms.

Dirk-Jan de Koning1, Chris S Haley.   

Abstract

Genetical genomics has been proposed to map loci controlling gene-expression differences (eQTLs) that might underlie functional trait variation. We briefly review the studies in model species and conclude that, although they successfully demonstrate the utility of genetical genomics, they are too limited to unlock the full potential of this approach and some results should be interpreted with caution. We subsequently elaborate on two recent studies that use this approach in humans. The many differences between these studies complicate meaningful comparisons between them. A joint analysis of the two experiments offers some scope for more powerful genetical genomics.

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Year:  2005        PMID: 15908034     DOI: 10.1016/j.tig.2005.05.004

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  48 in total

Review 1.  Systems genetics, bioinformatics and eQTL mapping.

Authors:  Hong Li; Hongwen Deng
Journal:  Genetica       Date:  2010-09-03       Impact factor: 1.082

2.  System-wide molecular evidence for phenotypic buffering in Arabidopsis.

Authors:  Jingyuan Fu; Joost J B Keurentjes; Harro Bouwmeester; Twan America; Francel W A Verstappen; Jane L Ward; Michael H Beale; Ric C H de Vos; Martijn Dijkstra; Richard A Scheltema; Frank Johannes; Maarten Koornneef; Dick Vreugdenhil; Rainer Breitling; Ritsert C Jansen
Journal:  Nat Genet       Date:  2009-01-25       Impact factor: 38.330

Review 3.  The genetics of quantitative traits: challenges and prospects.

Authors:  Trudy F C Mackay; Eric A Stone; Julien F Ayroles
Journal:  Nat Rev Genet       Date:  2009-08       Impact factor: 53.242

4.  Optimal design of genetic studies of gene expression with two-color microarrays in outbred crosses.

Authors:  Alex C Lam; Jingyuan Fu; Ritsert C Jansen; Chris S Haley; Dirk-Jan de Koning
Journal:  Genetics       Date:  2008-09-14       Impact factor: 4.562

5.  Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots.

Authors:  Hyun Min Kang; Chun Ye; Eleazar Eskin
Journal:  Genetics       Date:  2008-09-14       Impact factor: 4.562

6.  Genetical toxicogenomics in Drosophila identifies master-modulatory loci that are regulated by developmental exposure to lead.

Authors:  Douglas M Ruden; Lang Chen; Debra Possidente; Bernard Possidente; Parsa Rasouli; Luan Wang; Xiangyi Lu; Mark D Garfinkel; Helmut V B Hirsch; Grier P Page
Journal:  Neurotoxicology       Date:  2009-09-06       Impact factor: 4.294

7.  Replication and narrowing of gene expression quantitative trait loci using inbred mice.

Authors:  Daniel M Gatti; Alison H Harrill; Fred A Wright; David W Threadgill; Ivan Rusyn
Journal:  Mamm Genome       Date:  2009-07-17       Impact factor: 2.957

8.  Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background.

Authors:  Harry A Noyes; Morris Agaba; Susan Anderson; Alan L Archibald; Andy Brass; John Gibson; Laurence Hall; Helen Hulme; Sung Jong Oh; Stephen Kemp
Journal:  BMC Genomics       Date:  2010-06-07       Impact factor: 3.969

9.  Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity.

Authors:  Nengyi Zhang; Amit Gur; Yves Gibon; Ronan Sulpice; Sherry Flint-Garcia; Michael D McMullen; Mark Stitt; Edward S Buckler
Journal:  PLoS One       Date:  2010-04-01       Impact factor: 3.240

10.  Technical analysis of cDNA microarrays.

Authors:  Cinda P Scott; Jeff VanWye; M Danielle McDonald; Douglas L Crawford
Journal:  PLoS One       Date:  2009-02-16       Impact factor: 3.240

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