Literature DB >> 15903454

Understanding mechanochemical coupling in kinesins using first-passage-time processes.

Anatoly B Kolomeisky1, Evgeny B Stukalin, Alex A Popov.   

Abstract

Kinesins are processive motor proteins that move along microtubules in a stepwise manner, and their motion is powered by the hydrolysis of ATP. Recent experiments have investigated the coupling between the individual steps of single kinesin molecules and ATP hydrolysis, taking explicitly into account forward steps, backward steps, and detachments. A theoretical study of mechanochemical coupling in kinesins, which extends the approach used successfully to describe the dynamics of motor proteins, is presented. The possibility of irreversible detachments of kinesins from the microtubules is explicitly taken into account. Using the method of first-passage times, experimental data on the mechanochemical coupling in kinesins are fully described using the simplest two-state model. It is shown that the dwell times for the kinesin to move one step forward or backward, or to dissociate irreversibly, are the same, although the probabilities of these events are different. It is concluded that the current theoretical view-that only the forward motion of the motor protein molecule is coupled to ATP hydrolysis--is consistent with all available experimental observations for kinesins.

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Year:  2005        PMID: 15903454     DOI: 10.1103/PhysRevE.71.031902

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  17 in total

1.  Unconventional processive mechanics of non-muscle myosin IIB.

Authors:  Melanie F Norstrom; Philip A Smithback; Ronald S Rock
Journal:  J Biol Chem       Date:  2010-05-29       Impact factor: 5.157

2.  Kinesin crouches to sprint but resists pushing.

Authors:  Michael E Fisher; Young C Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-17       Impact factor: 11.205

3.  On the hand-over-hand mechanism of kinesin.

Authors:  Qiang Shao; Yi Qin Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-12       Impact factor: 11.205

Review 4.  Dwell time symmetry in random walks and molecular motors.

Authors:  Martin Lindén; Mats Wallin
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

5.  Extending the absorbing boundary method to fit dwell-time distributions of molecular motors with complex kinetic pathways.

Authors:  Jung-Chi Liao; James A Spudich; David Parker; Scott L Delp
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-21       Impact factor: 11.205

6.  Mechanisms and topology determination of complex chemical and biological network systems from first-passage theoretical approach.

Authors:  Xin Li; Anatoly B Kolomeisky
Journal:  J Chem Phys       Date:  2013-10-14       Impact factor: 3.488

7.  Growth and shortening of microtubules: a two-state model approach.

Authors:  Yunxin Zhang
Journal:  J Biol Chem       Date:  2011-09-07       Impact factor: 5.157

8.  A Unified Walking Model for Dimeric Motor Proteins.

Authors:  Kazuo Sasaki; Motoshi Kaya; Hideo Higuchi
Journal:  Biophys J       Date:  2018-10-16       Impact factor: 4.033

9.  Unveiling the hidden structure of complex stochastic biochemical networks.

Authors:  Angelo Valleriani; Xin Li; Anatoly B Kolomeisky
Journal:  J Chem Phys       Date:  2014-02-14       Impact factor: 3.488

10.  Pathway structure determination in complex stochastic networks with non-exponential dwell times.

Authors:  Xin Li; Anatoly B Kolomeisky; Angelo Valleriani
Journal:  J Chem Phys       Date:  2014-05-14       Impact factor: 3.488

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