Literature DB >> 15883994

A computational study of thiolate and selenolate oxidation by hydrogen peroxide.

Bruno Cardey1, Mironel Enescu.   

Abstract

Ab initio molecular orbital calculations have been used to study the effects of the molecular environment on the oxidation of thiolate and selenolate by hydrogen peroxide. The reaction was first examined in vacuo at the QCISD(T)/6-311+G(2df,2pd)//MP2/6-311+G(d,p) level of theory. It was found for both thiolate and selenolate that a reactant aggregate is formed, which has a dissociation rate constant comparable to the activation rate constant (about 10(-3) s(-1) for thiolate and 10(-1) s(-1) for selenolate). Using the polarizable continuum model (PCM) it was then found that the dissociation barrier energy decreases dramatically in water giving a dissociation rate constant of the order of 10(9) s(-1). In this case, the predicted overall rate constant of the thiolate reaction was about 10.2 mol(-1) dm3 s(-1), which is in good agreement with the experimental rate constant of cysteine oxidation in aqueous solution. The calculated rate constant for the selenolate reaction was somewhat higher (about 35.4 mol(-1) dm3 s(-1)). However, this value is several orders of magnitude smaller than the experimental value reported for the oxidation of selenocysteine in glutathione peroxidase. By considering the effect of the PCM dielectric constant on the reaction rate constant it was concluded that the high reactivity of the selenocysteine in glutathione peroxidase, as compared with cysteine, could be mainly due to the molecular environment of the selenocysteine residue.

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Year:  2005        PMID: 15883994     DOI: 10.1002/cphc.200400568

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  10 in total

1.  Molecular basis of the mechanism of thiol oxidation by hydrogen peroxide in aqueous solution: challenging the SN2 paradigm.

Authors:  Ari Zeida; Ryan Babbush; Mariano C González Lebrero; Madia Trujillo; Rafael Radi; Darío A Estrin
Journal:  Chem Res Toxicol       Date:  2012-02-16       Impact factor: 3.739

Review 2.  Selenium at the redox interface of the genome, metabolome and exposome.

Authors:  Jolyn Fernandes; Xin Hu; M Ryan Smith; Young-Mi Go; Dean P Jones
Journal:  Free Radic Biol Med       Date:  2018-06-05       Impact factor: 7.376

3.  Computational study of the hydrogen peroxide scavenging mechanism of allyl methyl disulfide, an antioxidant compound from garlic.

Authors:  Esteban G Vega-Hissi; Matias F Andrada; Mario G Díaz; Juan C Garro Martinez
Journal:  Mol Divers       Date:  2019-02-12       Impact factor: 2.943

Review 4.  Thiol redox biochemistry: insights from computer simulations.

Authors:  Ari Zeida; Carlos M Guardia; Pablo Lichtig; Laura L Perissinotti; Lucas A Defelipe; Adrián Turjanski; Rafael Radi; Madia Trujillo; Darío A Estrin
Journal:  Biophys Rev       Date:  2014-01-09

5.  Theoretical insights into the mechanism of redox switch in heat shock protein Hsp33.

Authors:  Mironel Enescu; Rima Kassim; Christophe Ramseyer; Bruno Cardey
Journal:  J Biol Inorg Chem       Date:  2015-01-31       Impact factor: 3.358

6.  Characterization of mitochondrial thioredoxin reductase from C. elegans.

Authors:  Brian M Lacey; Robert J Hondal
Journal:  Biochem Biophys Res Commun       Date:  2006-05-24       Impact factor: 3.575

7.  The extraordinary catalytic ability of peroxiredoxins: a combined experimental and QM/MM study on the fast thiol oxidation step.

Authors:  Ari Zeida; Anibal M Reyes; Mariano C G Lebrero; Rafael Radi; Madia Trujillo; Darío A Estrin
Journal:  Chem Commun (Camb)       Date:  2014-09-11       Impact factor: 6.222

8.  Oxidation reactivity of zinc-cysteine clusters in metallothionein.

Authors:  Rima Kassim; Christophe Ramseyer; Mironel Enescu
Journal:  J Biol Inorg Chem       Date:  2013-01-20       Impact factor: 3.358

9.  Nucleation of mercury sulfide by dealkylation.

Authors:  Mironel Enescu; Kathryn L Nagy; Alain Manceau
Journal:  Sci Rep       Date:  2016-12-19       Impact factor: 4.379

10.  A dual attack on the peroxide bond. The common principle of peroxidatic cysteine or selenocysteine residues.

Authors:  M Dalla Tiezza; F M Bickelhaupt; L Flohé; M Maiorino; F Ursini; L Orian
Journal:  Redox Biol       Date:  2020-04-14       Impact factor: 11.799

  10 in total

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