Literature DB >> 15879697

Recent progress of structural biology of tRNA processing and modification.

Kotaro Nakanishi1, Osamu Nureki.   

Abstract

Transfer RNA (tRNA) is a key molecule to decode the genetic information on mRNA to amino aicds (protein), in a ribosome. For tRNA to fulfill its adopter function, tRNA should be processed into the standard length, and be post-transcriptionally modified. This modification step is essential for the tRNA to maintain the canonical L-shaped structure, which is required for the decoding function of tRNA. Otherwise, it has recently been proposed that modification procedure itself contributes to the RNA (re)folding, where the modification enzymes function as a kind of RNA chaperones. Recent genome analyses and post-genome (proteomics and transcriptomics) analyses have identified genes involved in the tRNA processings and modifications. Furthermore, post-genomic structural analysis has elucidated the structural basis for the tRNA maturation mechanism. In this paper, the recent progress of the structural biology of the tRNA processing and modification is reviewed.

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Year:  2005        PMID: 15879697

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  16 in total

1.  Elucidating the role of C/D snoRNA in rRNA processing and modification in Trypanosoma brucei.

Authors:  Sarit Barth; Boaz Shalem; Avraham Hury; Itai Dov Tkacz; Xue-Hai Liang; Shai Uliel; Inna Myslyuk; Tirza Doniger; Mali Salmon-Divon; Ron Unger; Shulamit Michaeli
Journal:  Eukaryot Cell       Date:  2007-11-02

Review 2.  Is tRNA only a translation factor or also a regulator of other processes?

Authors:  Grzegorz Wegrzyn; Alicja Wegrzyn
Journal:  J Appl Genet       Date:  2008       Impact factor: 3.240

Review 3.  The pleiotropic cell separation mutation spl1-1 is a nucleotide substitution in the internal promoter of the proline tRNACGG gene of Schizosaccharomyces pombe.

Authors:  Ida Miklos; Katalin Ludanyi; Matthias Sipiczki
Journal:  Curr Genet       Date:  2009-07-28       Impact factor: 3.886

4.  Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase.

Authors:  Kotaro Nakanishi; Luc Bonnefond; Satoshi Kimura; Tsutomu Suzuki; Ryuichiro Ishitani; Osamu Nureki
Journal:  Nature       Date:  2009-10-22       Impact factor: 49.962

5.  Biochemical and genetic evidence for a role of IGHMBP2 in the translational machinery.

Authors:  Mariàngels de Planell-Saguer; David G Schroeder; Maria Celina Rodicio; Gregory A Cox; Zissimos Mourelatos
Journal:  Hum Mol Genet       Date:  2009-03-19       Impact factor: 6.150

6.  Expression, purification, crystallization and preliminary X-ray studies of the TAN1 orthologue from Methanothermobacter thermautotrophicus.

Authors:  Ana P G Silva; Robert T Byrne; Maria Chechik; Callum Smits; David G Waterman; Alfred A Antson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-31

7.  Crystal structure of Streptococcus pneumoniae Sp1610, a putative tRNA methyltransferase, in complex with S-adenosyl-L-methionine.

Authors:  Hai Minh Ta; Kyeong Kyu Kim
Journal:  Protein Sci       Date:  2010-03       Impact factor: 6.725

Review 8.  The occurrence order and cross-talk of different tRNA modifications.

Authors:  Jing Li; Wen-Yu Zhu; Wen-Qing Yang; Cai-Tao Li; Ru-Juan Liu
Journal:  Sci China Life Sci       Date:  2021-04-19       Impact factor: 6.038

9.  Bioinformatic Prediction of an tRNASec Gene Nested inside an Elongation Factor SelB Gene in Alphaproteobacteria.

Authors:  Takahito Mukai
Journal:  Int J Mol Sci       Date:  2021-04-27       Impact factor: 5.923

10.  Modular architecture of eukaryotic RNase P and RNase MRP revealed by electron microscopy.

Authors:  Katharina Hipp; Kyriaki Galani; Claire Batisse; Simone Prinz; Bettina Böttcher
Journal:  Nucleic Acids Res       Date:  2011-12-13       Impact factor: 16.971

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