Literature DB >> 17981991

Elucidating the role of C/D snoRNA in rRNA processing and modification in Trypanosoma brucei.

Sarit Barth1, Boaz Shalem, Avraham Hury, Itai Dov Tkacz, Xue-Hai Liang, Shai Uliel, Inna Myslyuk, Tirza Doniger, Mali Salmon-Divon, Ron Unger, Shulamit Michaeli.   

Abstract

Most eukaryotic C/D small nucleolar RNAs (snoRNAs) guide 2'-O methylation (Nm) on rRNA and are also involved in rRNA processing. The four core proteins that bind C/D snoRNA in Trypanosoma brucei are fibrillarin (NOP1), NOP56, NOP58, and SNU13. Silencing of NOP1 by RNA interference identified rRNA-processing and modification defects that caused lethality. Systematic mapping of 2'-O-methyls on rRNA revealed the existence of hypermethylation at certain positions of the rRNA in the bloodstream form of the parasites, suggesting that this modification may assist the parasites in coping with the major temperature changes during cycling between their insect and mammalian hosts. The rRNA-processing defects of NOP1-depleted cells suggest the involvement of C/D snoRNA in trypanosome-specific rRNA-processing events to generate the small rRNA fragments. MRP RNA, which is involved in rRNA processing, was identified in this study in one of the snoRNA gene clusters, suggesting that trypanosomes utilize a combination of unique C/D snoRNAs and conserved snoRNAs for rRNA processing.

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Year:  2007        PMID: 17981991      PMCID: PMC2224155          DOI: 10.1128/EC.00215-07

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  66 in total

1.  The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA.

Authors:  Xue-Hai Liang; Yu-Xin Xu; Shulamit Michaeli
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

2.  Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA.

Authors:  J Ni; A L Tien; M J Fournier
Journal:  Cell       Date:  1997-05-16       Impact factor: 41.582

Review 3.  Function and synthesis of small nucleolar RNAs.

Authors:  D Tollervey; T Kiss
Journal:  Curr Opin Cell Biol       Date:  1997-06       Impact factor: 8.382

4.  Fibrillarin-associated box C/D small nucleolar RNAs in Trypanosoma brucei. Sequence conservation and implications for 2'-O-ribose methylation of rRNA.

Authors:  D A Dunbar; S Wormsley; T M Lowe; S J Baserga
Journal:  J Biol Chem       Date:  2000-05-12       Impact factor: 5.157

5.  Synthesis and assembly of the box C+D small nucleolar RNPs.

Authors:  D L Lafontaine; D Tollervey
Journal:  Mol Cell Biol       Date:  2000-04       Impact factor: 4.272

6.  The genes for small nucleolar RNAs in Trypanosoma brucei are organized in clusters and are transcribed as a polycistronic RNA.

Authors:  D A Dunbar; A A Chen; S Wormsley; S J Baserga
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

7.  Trypanosoma brucei 5'ETS A'-cleavage is directed by 3'-adjacent sequences, but not two U3 snoRNA-binding elements, which are all required for subsequent pre-small subunit rRNA processing events.

Authors:  T Hartshorne; W Toyofuku; J Hollenbaugh
Journal:  J Mol Biol       Date:  2001-11-02       Impact factor: 5.469

8.  In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex.

Authors:  Arina D Omer; Sonia Ziesche; Holger Ebhardt; Patrick P Dennis
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

9.  Mapping 2'-O-methyl groups in ribosomal RNA.

Authors:  B E Maden
Journal:  Methods       Date:  2001-11       Impact factor: 3.608

Review 10.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

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  23 in total

1.  Analysis of spliceosomal proteins in Trypanosomatids reveals novel functions in mRNA processing.

Authors:  Itai Dov Tkacz; Sachin Kumar Gupta; Vadim Volkov; Mali Romano; Tomer Haham; Pawel Tulinski; Ilana Lebenthal; Shulamit Michaeli
Journal:  J Biol Chem       Date:  2010-06-30       Impact factor: 5.157

2.  Genome-wide analysis of small nucleolar RNAs of Leishmania major reveals a rich repertoire of RNAs involved in modification and processing of rRNA.

Authors:  Dror Eliaz; Tirza Doniger; Itai Dov Tkacz; Viplov Kumar Biswas; Sachin Kumar Gupta; Nikolay G Kolev; Ron Unger; Elisabetta Ullu; Christian Tschudi; Shulamit Michaeli
Journal:  RNA Biol       Date:  2015-05-13       Impact factor: 4.652

3.  Basal splicing factors regulate the stability of mature mRNAs in trypanosomes.

Authors:  Sachin Kumar Gupta; Shai Carmi; Hiba Waldman Ben-Asher; Itai Dov Tkacz; Ilana Naboishchikov; Shulamit Michaeli
Journal:  J Biol Chem       Date:  2013-01-02       Impact factor: 5.157

4.  The large repertoire of 2'-O-methylation guided by C/D snoRNAs on Trypanosoma brucei rRNA.

Authors:  K Shanmugha Rajan; Yinzhou Zhu; Katerina Adler; Tirza Doniger; Smadar Cohen-Chalamish; Ankita Srivastava; Moran Shalev-Benami; Donna Matzov; Ron Unger; Christian Tschudi; Arthur Günzl; Gordon G Carmichael; Shulamit Michaeli
Journal:  RNA Biol       Date:  2020-04-21       Impact factor: 4.652

5.  Two splicing factors carrying serine-arginine motifs, TSR1 and TSR1IP, regulate splicing, mRNA stability, and rRNA processing in Trypanosoma brucei.

Authors:  Sachin Kumar Gupta; Vaibhav Chikne; Dror Eliaz; Itai Dov Tkacz; Ilana Naboishchikov; Shai Carmi; Hiba Waldman Ben-Asher; Shulamit Michaeli
Journal:  RNA Biol       Date:  2014-05-13       Impact factor: 4.652

6.  Small nucleolar RNA interference in Trypanosoma brucei: mechanism and utilization for elucidating the function of snoRNAs.

Authors:  Sachin Kumar Gupta; Avraham Hury; Yaara Ziporen; Huafang Shi; Elisabetta Ullu; Shulamit Michaeli
Journal:  Nucleic Acids Res       Date:  2010-07-03       Impact factor: 16.971

7.  A comparative genome-wide study of ncRNAs in trypanosomatids.

Authors:  Tirza Doniger; Rodolfo Katz; Chaim Wachtel; Shulamit Michaeli; Ron Unger
Journal:  BMC Genomics       Date:  2010-11-04       Impact factor: 3.969

8.  Nucleolar localization of RNA binding proteins induced by actinomycin D and heat shock in Trypanosoma cruzi.

Authors:  Ezequiel Názer; Ramiro E Verdún; Daniel O Sánchez
Journal:  PLoS One       Date:  2011-05-24       Impact factor: 3.240

9.  RNA-seq analysis of small RNPs in Trypanosoma brucei reveals a rich repertoire of non-coding RNAs.

Authors:  Shulamit Michaeli; Tirza Doniger; Sachin Kumar Gupta; Omri Wurtzel; Mali Romano; Damian Visnovezky; Rotem Sorek; Ron Unger; Elisabetta Ullu
Journal:  Nucleic Acids Res       Date:  2011-10-05       Impact factor: 16.971

10.  Characterizing ncRNAs in Human Pathogenic Protists Using High-Throughput Sequencing Technology.

Authors:  Lesley Joan Collins
Journal:  Front Genet       Date:  2011-12-27       Impact factor: 4.599

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