Literature DB >> 18495860

Practical method for detection and identification of Candida, Aspergillus, and Scedosporium spp. by use of rolling-circle amplification.

Xiaoyong Zhou1, Fanrong Kong, Tania C Sorrell, Hui Wang, Yiqun Duan, Sharon C A Chen.   

Abstract

A sensitive rolling-circle amplification (RCA)-based method utilizing species-specific padlock probes targeted to the internal transcribed spacer 2 region of the fungal ribosomal DNA gene complex was developed. The assay was rapid (2 hours) and specific. Of 28 fungal isolates (16 of Candida, six of Aspergillus, and six of Scedosporium spp.), all were all identified correctly.

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Year:  2008        PMID： 18495860      PMCID： PMC2446935          DOI： 10.1128/JCM.00420-08

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  20 in total

1.  Identification of medically important yeasts using PCR-based detection of DNA sequence polymorphisms in the internal transcribed spacer 2 region of the rRNA genes.

Authors:  Y C Chen; J D Eisner; M M Kattar; S L Rassoulian-Barrett; K LaFe; S L Yarfitz; A P Limaye; B T Cookson
Journal:  J Clin Microbiol       Date:  2000-06       Impact factor: 5.948

Review 2.  Infections due to emerging and uncommon medically important fungal pathogens.

Authors:  T J Walsh; A Groll; J Hiemenz; R Fleming; E Roilides; E Anaissie
Journal:  Clin Microbiol Infect       Date:  2004-03       Impact factor: 8.067

Review 3.  Analyzing genes using closing and replicating circles.

Authors:  Mats Nilsson; Fredrik Dahl; Chatarina Larsson; Mats Gullberg; Johan Stenberg
Journal:  Trends Biotechnol       Date:  2005-12-27       Impact factor: 19.536

4.  High-throughput identification of clinical pathogenic fungi by hybridization to an oligonucleotide microarray.

Authors:  Aihua Huang; Jun-Wen Li; Zhi-Qiang Shen; Xin-Wei Wang; Min Jin
Journal:  J Clin Microbiol       Date:  2006-09       Impact factor: 5.948

5.  Development of novel real-time PCR assays for detection and differentiation of eleven medically important Aspergillus and Candida species in clinical specimens.

Authors:  Claudia Schabereiter-Gurtner; Brigitte Selitsch; Manfred L Rotter; Alexander M Hirschl; Birgit Willinger
Journal:  J Clin Microbiol       Date:  2007-01-24       Impact factor: 5.948

6.  Detection and identification of fungal pathogens in blood by using molecular probes.

Authors:  H Einsele; H Hebart; G Roller; J Löffler; I Rothenhofer; C A Müller; R A Bowden; J van Burik; D Engelhard; L Kanz; U Schumacher
Journal:  J Clin Microbiol       Date:  1997-06       Impact factor: 5.948

7.  Scedosporium/Pseudallescheria infections.

Authors:  Anil A Panackal; Kieren A Marr
Journal:  Semin Respir Crit Care Med       Date:  2004-04       Impact factor: 3.119

Review 8.  Invasive fungal infections: a review of epidemiology and management options.

Authors:  D A Enoch; H A Ludlam; N M Brown
Journal:  J Med Microbiol       Date:  2006-07       Impact factor: 2.472

9.  DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients.

Authors:  Birgit Spiess; Wolfgang Seifarth; Margit Hummel; Oliver Frank; Alice Fabarius; Chun Zheng; Handan Mörz; Rüdiger Hehlmann; Dieter Buchheidt
Journal:  J Clin Microbiol       Date:  2007-08-22       Impact factor: 5.948

10.  Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions.

Authors:  Shiang Ning Leaw; Hsien Chang Chang; Hsiao Fang Sun; Richard Barton; Jean-Philippe Bouchara; Tsung Chain Chang
Journal:  J Clin Microbiol       Date:  2006-03       Impact factor: 5.948
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  26 in total

1.  Identification and typing of isolates of Cyphellophora and relatives by use of amplified fragment length polymorphism and rolling circle amplification.

Authors:  Peiying Feng; Corné H W Klaassen; Jacques F Meis; M J Najafzadeh; A H G Gerrits Van Den Ende; Liyan Xi; G S de Hoog
Journal:  J Clin Microbiol       Date:  2013-01-09       Impact factor: 5.948

2.  The importance of a proper aetiological diagnosis in the management of patients with invasive mycoses: a case report of a brain abscess by Scedosporium apiospermum.

Authors:  Giuseppina Caggiano; Piero Cantisani; Marilena Rolli; Cosimo Damiano Gianfreda; Maria Pizzolante; Maria Teresa Montagna
Journal:  Mycopathologia       Date:  2011-06-17       Impact factor: 2.574

3.  Rapid identification of Pseudallescheria and Scedosporium strains by using rolling circle amplification.

Authors:  Michaela Lackner; Mohammad Javad Najafzadeh; Jiufeng Sun; Qiaoyun Lu; G Sybren de Hoog
Journal:  Appl Environ Microbiol       Date:  2011-11-04       Impact factor: 4.792

4.  Identification of Pseudallescheria and Scedosporium species by three molecular methods.

Authors:  Qiaoyun Lu; A H G Gerrits van den Ende; J M J E Bakkers; Jiufeng Sun; M Lackner; M J Najafzadeh; W J G Melchers; Ruoyu Li; G S de Hoog
Journal:  J Clin Microbiol       Date:  2010-12-22       Impact factor: 5.948

Review 5.  Cryptococcus gattii infections.

Authors:  Sharon C-A Chen; Wieland Meyer; Tania C Sorrell
Journal:  Clin Microbiol Rev       Date:  2014-10       Impact factor: 26.132

6.  Challenges in Laboratory Detection of Fungal Pathogens in the Airways of Cystic Fibrosis Patients.

Authors:  Sharon C-A Chen; Wieland Meyer; Catherine H Pashley
Journal:  Mycopathologia       Date:  2017-06-06       Impact factor: 2.574

7.  Use of rolling circle amplification to rapidly identify species of Cladophialophora potentially causing human infection.

Authors:  Hossein Hamzehei; Seyed Amir Yazdanparast; Mehrnaz Mohammad Davoudi; Sadegh Khodavaisy; Mitra Golehkheyli; Saham Ansari; G S de Hoog; Hamid Badali
Journal:  Mycopathologia       Date:  2013-03-08       Impact factor: 2.574

Review 8.  Advances in Candida detection platforms for clinical and point-of-care applications.

Authors:  Mohammadali Safavieh; Chad Coarsey; Nwadiuto Esiobu; Adnan Memic; Jatin Mahesh Vyas; Hadi Shafiee; Waseem Asghar
Journal:  Crit Rev Biotechnol       Date:  2016-04-19       Impact factor: 8.429

9.  Tracking the emerging human pathogen Pseudallescheria boydii by using highly specific monoclonal antibodies.

Authors:  Christopher R Thornton
Journal:  Clin Vaccine Immunol       Date:  2009-03-25

10.  Rapid detection of ERG11 gene mutations in clinical Candida albicans isolates with reduced susceptibility to fluconazole by rolling circle amplification and DNA sequencing.

Authors:  Huiping Wang; Fanrong Kong; Tania C Sorrell; Bin Wang; Paul McNicholas; Namfon Pantarat; David Ellis; Meng Xiao; Fred Widmer; Sharon Ca Chen
Journal:  BMC Microbiol       Date:  2009-08-14       Impact factor: 3.605
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