Literature DB >> 15870731

Ribozyme catalysis: not different, just worse.

Jennifer A Doudna1, Jon R Lorsch.   

Abstract

Evolution has resoundingly favored protein enzymes over RNA-based catalysts, yet ribozymes occupy important niches in modern cell biology that include the starring role in catalysis of protein synthesis on the ribosome. Recent results from structural and biochemical studies show that natural ribozymes use an impressive range of catalytic mechanisms, beyond metalloenzyme chemistry and analogous to more chemically diverse protein enzymes. These findings make it increasingly possible to compare details of RNA- and protein-based catalysis.

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Year:  2005        PMID: 15870731     DOI: 10.1038/nsmb932

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  59 in total

1.  The human HDV-like CPEB3 ribozyme is intrinsically fast-reacting.

Authors:  Durga M Chadalavada; Elizabeth A Gratton; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2010-06-29       Impact factor: 3.162

Review 2.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

3.  Does the Ribosome Challenge our Understanding of the RNA World?

Authors:  Anthony M Poole; Daniel C Jeffares; Marc P Hoeppner; David Penny
Journal:  J Mol Evol       Date:  2015-11-18       Impact factor: 2.395

4.  Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif.

Authors:  Pradeep S Pallan; William S Marshall; Joel Harp; Frederic C Jewett; Zdzislaw Wawrzak; Bernard A Brown; Alexander Rich; Martin Egli
Journal:  Biochemistry       Date:  2005-08-30       Impact factor: 3.162

5.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

6.  Trapped water molecules are essential to structural dynamics and function of a ribozyme.

Authors:  Maria M Rhodes; Kamila Réblová; Jirí Sponer; Nils G Walter
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-24       Impact factor: 11.205

7.  Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme.

Authors:  M Duane Smith; Richard A Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-26       Impact factor: 11.205

8.  Coupling of fast and slow modes in the reaction pathway of the minimal hammerhead ribozyme cleavage.

Authors:  Ravi Radhakrishnan
Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

9.  Modeling Small Noncanonical RNA Motifs with the Rosetta FARFAR Server.

Authors:  Joseph D Yesselman; Rhiju Das
Journal:  Methods Mol Biol       Date:  2016

Review 10.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

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