Literature DB >> 15869469

Bacillus subtilis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase revisited: resolution of two long-standing enigmas.

Jing Wu1, Galina Ya Sheflyan, Ronald W Woodard.   

Abstract

The mono/bifunctional and metallo/non-metallo properties of Bacillus subtilis DAHPS (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) have been controversial for several decades. The present study investigated the DAHPSs from both the B. subtilis parent Marburg strain and the derivative strain 168 in detail and clarified the above two long-standing questions. The DAHPSs from the parent and the derivative 168 strains have identical sequence and are both bifunctional enzymes with a CM (chorismate mutase) activity and a DAHPS activity. The parent strain expresses a second independent monofunctional CM, encoded by aroH, that is highly active, while the 168 strain expresses an aroH containing a single residue mutation (A112V) that is significantly less active thus leading to previous confusion regarding the mono/bifunctionality of DAHPS. Metal analysis showed that B. subtilis DAHPS as isolated contained iron and zinc and is inactivated by dipicolinic acid; the inactive apoenzyme can be reactivated by bivalent metal ions, indicating that the enzyme is a metalloenzyme. The enzyme-bound metal is insensitive to EDTA treatment, leading to the previous conclusion that this DAHPS does not require a metal. The enzyme displays a homotetrameric structure in solution and appears to follow Michaelis-Menten kinetics with K(m)(PEP)=139+/-11.4 microM for phosphoenolpyruvate, K(m)(E4P)=1760+/-110 microM for D-erythrose 4-phosphate, kcat=4.6+/-0.1 s(-1) for DAHPS activity and K(m)(chorismate)=850+/-97 microM, kcat=0.41+/-0.01 s(-1) for CM activity. B. subtilis DAHPS is inhibited by the Shikimate pathway intermediates prephenate and chorismate.

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Year:  2005        PMID: 15869469      PMCID: PMC1198938          DOI: 10.1042/BJ20050294

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  36 in total

1.  Monofunctional chorismate mutase from Bacillus subtilis: purification of the protein, molecular cloning of the gene, and overexpression of the gene product in Escherichia coli.

Authors:  J V Gray; B Golinelli-Pimpaneau; J R Knowles
Journal:  Biochemistry       Date:  1990-01-16       Impact factor: 3.162

2.  Regulatory enzymes of aromatic amino acid biosynthesis in Bacillus subtilis. I. Purification and properties of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase.

Authors:  R A Jensen; E W Nester
Journal:  J Biol Chem       Date:  1966-07-25       Impact factor: 5.157

3.  Tyrosine biosynthesis in Aerobacter aerogenes. Purification and properties of chorismate mutase-prephenate dehydrogenase.

Authors:  G L Koch; D C Shaw; F Gibson
Journal:  Biochim Biophys Acta       Date:  1970-09-16

4.  Structures of Aquifex aeolicus KDO8P synthase in complex with R5P and PEP, and with a bisubstrate inhibitor: role of active site water in catalysis.

Authors:  J Wang; H S Duewel; R W Woodard; D L Gatti
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

5.  Analysis of the metal requirement of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Escherichia coli.

Authors:  C M Stephens; R Bauerle
Journal:  J Biol Chem       Date:  1991-11-05       Impact factor: 5.157

6.  The monofunctional chorismate mutase from Bacillus subtilis. Structure determination of chorismate mutase and its complexes with a transition state analog and prephenate, and implications for the mechanism of the enzymatic reaction.

Authors:  Y M Chook; J V Gray; H Ke; W N Lipscomb
Journal:  J Mol Biol       Date:  1994-07-29       Impact factor: 5.469

7.  Regulation of aromatic amino acid biosynthesis in Bacillus subtilis 168. Purification, characterization, and subunit structure of the bifunctional enzyme 3-deoxy-D-arabinoheptulosonate 7-phosphate synthetase-chorismate mutase.

Authors:  L Huang; M Nakatsukasa; E Nester
Journal:  J Biol Chem       Date:  1974-07-25       Impact factor: 5.157

8.  Substrate ambiguity of 3-deoxy-D-manno-octulosonate 8-phosphate synthase from Neisseria gonorrhoeae in the context of its membership in a protein family containing a subset of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases.

Authors:  P S Subramaniam; G Xie; T Xia; R A Jensen
Journal:  J Bacteriol       Date:  1998-01       Impact factor: 3.490

9.  The cloning and nucleotide sequence of a Corynebacterium glutamicum 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase gene.

Authors:  C C Chen; C C Liao; W H Hsu
Journal:  FEMS Microbiol Lett       Date:  1993-03-01       Impact factor: 2.742

10.  The emerging periplasm-localized subclass of AroQ chorismate mutases, exemplified by those from Salmonella typhimurium and Pseudomonas aeruginosa.

Authors:  D H Calhoun; C A Bonner; W Gu; G Xie; R A Jensen
Journal:  Genome Biol       Date:  2001-07-27       Impact factor: 13.583

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  10 in total

1.  Interdomain Conformational Changes Provide Allosteric Regulation en Route to Chorismate.

Authors:  Ali Reza Nazmi; Eric J M Lang; Yu Bai; Timothy M Allison; Mohamad H Othman; Santosh Panjikar; Vickery L Arcus; Emily J Parker
Journal:  J Biol Chem       Date:  2016-08-08       Impact factor: 5.157

2.  Structural analysis of a 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase with an N-terminal chorismate mutase-like regulatory domain.

Authors:  Samuel H Light; Andrei S Halavaty; George Minasov; Ludmilla Shuvalova; Wayne F Anderson
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

3.  Synergistic allostery, a sophisticated regulatory network for the control of aromatic amino acid biosynthesis in Mycobacterium tuberculosis.

Authors:  Celia J Webby; Wanting Jiao; Richard D Hutton; Nicola J Blackmore; Heather M Baker; Edward N Baker; Geoffrey B Jameson; Emily J Parker
Journal:  J Biol Chem       Date:  2010-07-27       Impact factor: 5.157

4.  Corynebacterium glutamicum contains 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases that display novel biochemical features.

Authors:  Ya-Jun Liu; Pan-Pan Li; Ke-Xin Zhao; Bao-Jun Wang; Cheng-Ying Jiang; Harold L Drake; Shuang-Jiang Liu
Journal:  Appl Environ Microbiol       Date:  2008-07-11       Impact factor: 4.792

5.  Physiological effects of anti-TRAP protein activity and tRNA(Trp) charging on trp operon expression in Bacillus subtilis.

Authors:  Luis R Cruz-Vera; Ming Gong; Charles Yanofsky
Journal:  J Bacteriol       Date:  2008-01-04       Impact factor: 3.490

Review 6.  The diversity of allosteric controls at the gateway to aromatic amino acid biosynthesis.

Authors:  Samuel H Light; Wayne F Anderson
Journal:  Protein Sci       Date:  2013-03-08       Impact factor: 6.725

7.  Structure of Chorismate Mutase-like Domain of DAHPS from Bacillus subtilis Complexed with Novel Inhibitor Reveals Conformational Plasticity of Active Site.

Authors:  Shivendra Pratap; Aditya Dev; Vijay Kumar; Ravi Yadav; Manju Narwal; Shailly Tomar; Pravindra Kumar
Journal:  Sci Rep       Date:  2017-07-25       Impact factor: 4.379

8.  Metabolic engineering of Bacillus subtilis for production of para-aminobenzoic acid - unexpected importance of carbon source is an advantage for space application.

Authors:  Nils J H Averesch; Lynn J Rothschild
Journal:  Microb Biotechnol       Date:  2019-04-13       Impact factor: 5.813

9.  Isolation and biochemical characterization of a metagenome-derived 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase gene from subtropical marine mangrove wetland sediments.

Authors:  Huaxian Zhao; Hua Gao; Kai Ji; Bing Yan; Quanwen Li; Shuming Mo; Minggang Zheng; Qian Ou; Bo Wu; Nan Li; Chengjian Jiang
Journal:  AMB Express       Date:  2019-02-04       Impact factor: 3.298

10.  Metabolic Engineering of Corynebacterium glutamicum for Sustainable Production of the Aromatic Dicarboxylic Acid Dipicolinic Acid.

Authors:  Lynn S Schwardmann; Aron K Dransfeld; Thomas Schäffer; Volker F Wendisch
Journal:  Microorganisms       Date:  2022-03-29
  10 in total

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