Literature DB >> 15857778

Directed evolution: selecting today's biocatalysts.

Linda G Otten1, Wim J Quax.   

Abstract

Directed evolution has become a full-grown tool in molecular biology nowadays. The methods that are involved in creating a mutant library are extensive and can be divided into several categories according to their basic ideas. Furthermore, both screening and selection can be used to target the enzyme towards the desired direction. Nowadays, this technique is broadly used in two major applications: (industrial) biocatalysis and research. In the first field enzymes are engineered in order to produce suitable biocatalysts with high catalytic activity and stability in an industrial environment. In the latter area methods are established to quickly engineer new enzymes for every possible catalytic step, thereby creating a universal biotechnological toolbox. Furthermore, directed evolution can be used to try to understand the natural evolutionary processes. This review deals with new mutagenesis and recombination strategies published recently. A full overview of new methods for creating more specialised mutant libraries is given. The importance of selection in directed evolution strategies is being exemplified by some current successes including the beta-lactam acylases.

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Year:  2005        PMID: 15857778     DOI: 10.1016/j.bioeng.2005.02.002

Source DB:  PubMed          Journal:  Biomol Eng        ISSN: 1389-0344


  13 in total

1.  Expression and function of a modified AP2/ERF transcription factor from Brassica napus enhances cold tolerance in transgenic Arabidopsis.

Authors:  Ai-Sheng Xiong; Hai-Hua Jiang; Jing Zhuang; Ri-He Peng; Xiao-Fen Jin; Bo Zhu; Feng Wang; Jian Zhang; Quan-Hong Yao
Journal:  Mol Biotechnol       Date:  2013-02       Impact factor: 2.695

2.  Interdisciplinarity: Bring biologists into biomimetics.

Authors:  Emilie Snell-Rood
Journal:  Nature       Date:  2016-01-21       Impact factor: 49.962

3.  Improvement of glyphosate resistance through concurrent mutations in three amino acids of the Ochrobactrum 5-enopyruvylshikimate-3-phosphate synthase.

Authors:  Yong-Sheng Tian; Jing Xu; Ai-Sheng Xiong; Wei Zhao; Xiao-Yan Fu; Ri-He Peng; Quan-Hong Yao
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

Review 4.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

Review 5.  Microbial conversion of pyrolytic products to biofuels: a novel and sustainable approach toward second-generation biofuels.

Authors:  Zia Ul Islam; Yu Zhisheng; El Barbary Hassan; Chang Dongdong; Zhang Hongxun
Journal:  J Ind Microbiol Biotechnol       Date:  2015-10-03       Impact factor: 3.346

6.  Thermostable DNA ligase-mediated PCR production of circular plasmid (PPCP) and its application in directed evolution via in situ error-prone PCR.

Authors:  Yilin Le; Huayou Chen; Robert Zagursky; J H David Wu; Weilan Shao
Journal:  DNA Res       Date:  2013-04-30       Impact factor: 4.458

7.  Development and functional analysis of novel genetic promoters using DNA shuffling, hybridization and a combination thereof.

Authors:  Rajiv Ranjan; Sunita Patro; Bhubaneswar Pradhan; Alok Kumar; Indu B Maiti; Nrisingha Dey
Journal:  PLoS One       Date:  2012-03-14       Impact factor: 3.240

8.  Controlling biofilm formation, prophage excision and cell death by rewiring global regulator H-NS of Escherichia coli.

Authors:  Seok Hoon Hong; Xiaoxue Wang; Thomas K Wood
Journal:  Microb Biotechnol       Date:  2010-03-04       Impact factor: 5.813

9.  A thermostable β-glucuronidase obtained by directed evolution as a reporter gene in transgenic plants.

Authors:  Ai-Sheng Xiong; Ri-He Peng; Jing Zhuang; Jian-Min Chen; Bin Zhang; Jian Zhang; Quan-Hong Yao
Journal:  PLoS One       Date:  2011-11-09       Impact factor: 3.240

10.  RAISE: a simple and novel method of generating random insertion and deletion mutations.

Authors:  Ryota Fujii; Motomitsu Kitaoka; Kiyoshi Hayashi
Journal:  Nucleic Acids Res       Date:  2006-02-21       Impact factor: 16.971

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