Literature DB >> 15857584

Chromatin domain boundaries: insulators and beyond.

Gong Hong Wei1, De Pei Liu, Chih Chuan Liang.   

Abstract

The eukaryotic genome is organized into functionally and structurally distinct domains, representing regulatory units for gene expression and chromosome behavior. DNA sequences that mark the border between adjacent domains are the insulators or boundary elements, which are required in maintenance of the function of different domains. Some insulators need others enable to play insulation activity. Chromatin domains are defined by distinct sets of post-translationally modified histones. Recent studies show that these histone modifications are also involved in establishment of sharp chromatin boundaries in order to prevent the spreading of distinct domains. Additionally, in some loci, the high-order chromatin structures for long-range looping interactions also have boundary activities, suggesting a correlation between insulators and chromatin loop domains. In this review, we will discuss recent progress in the field of chromatin domain boundaries.

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Year:  2005        PMID: 15857584     DOI: 10.1038/sj.cr.7290298

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  14 in total

1.  Identification, genome mapping, and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human chromosome 19q13.12.

Authors:  Sergey B Akopov; Vera M Ruda; Vera V Batrak; Anna S Vetchinova; Igor P Chernov; Lev G Nikolaev; Jürgen Bode; Eugene D Sverdlov
Journal:  Mamm Genome       Date:  2006-10-03       Impact factor: 2.957

Review 2.  Unravelling the world of cis-regulatory elements.

Authors:  Zhao Wang; Gong-Hong Wei; De-Pei Liu; Chih-Chuan Liang
Journal:  Med Biol Eng Comput       Date:  2007-05-31       Impact factor: 2.602

Review 3.  Enhancers.

Authors:  Ken W Y Cho
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2012-04-09       Impact factor: 5.814

4.  Maps of cis-Regulatory Nodes in Megabase Long Genome Segments are an Inevitable Intermediate Step Toward Whole Genome Functional Mapping.

Authors:  Lev G Nikolaev; Sergey B Akopov; Igor P Chernov; Eugene D Sverdlov
Journal:  Curr Genomics       Date:  2007-04       Impact factor: 2.236

5.  Neighbourhood continuity is not required for correct testis gene expression in Drosophila.

Authors:  Lisa A Meadows; Yuk Sang Chan; John Roote; Steven Russell
Journal:  PLoS Biol       Date:  2010-11-30       Impact factor: 8.029

6.  Transgene-induced silencing of the zoosporogenesis-specific NIFC gene cluster of Phytophthora infestans involves chromatin alterations.

Authors:  Howard S Judelson; Shuji Tani
Journal:  Eukaryot Cell       Date:  2007-05-04

7.  A chimeric HS4-SAR insulator (IS2) that prevents silencing and enhances expression of lentiviral vectors in pluripotent stem cells.

Authors:  Karim Benabdellah; Alejandra Gutierrez-Guerrero; Marién Cobo; Pilar Muñoz; Francisco Martín
Journal:  PLoS One       Date:  2014-01-06       Impact factor: 3.240

8.  Analysis of chromatin boundary activity in Drosophila cells.

Authors:  Mo Li; Vladimir E Belozerov; Haini N Cai
Journal:  BMC Mol Biol       Date:  2008-12-11       Impact factor: 2.946

9.  Gene clusters, molecular evolution and disease: a speculation.

Authors:  Leah I Elizondo; Paymaan Jafar-Nejad; J Marietta Clewing; Cornelius F Boerkoel
Journal:  Curr Genomics       Date:  2009-03       Impact factor: 2.236

10.  Diverse transcription influences can be insulated by the Drosophila SF1 chromatin boundary.

Authors:  Parimal Majumder; Sharmila Roy; Vladimir E Belozerov; Dimple Bosu; Meena Puppali; Haini N Cai
Journal:  Nucleic Acids Res       Date:  2009-05-12       Impact factor: 16.971

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