Literature DB >> 15854646

Molecular basis of gyrase poisoning by the addiction toxin CcdB.

Minh-Hoa Dao-Thi1, Laurence Van Melderen, Erwin De Genst, Hassan Afif, Lieven Buts, Lode Wyns, Remy Loris.   

Abstract

Gyrase is an ubiquitous bacterial enzyme that is responsible for disentangling DNA during DNA replication and transcription. It is the target of the toxin CcdB, a paradigm for plasmid addiction systems and related bacterial toxin-antitoxin systems. The crystal structure of CcdB and the dimerization domain of the A subunit of gyrase (GyrA14) dictates an open conformation for the catalytic domain of gyrase when CcdB is bound. The action of CcdB is one of a wedge that stabilizes a dead-end covalent gyrase:DNA adduct. Although CcdB and GyrA14 form a globally symmetric complex where the two 2-fold axes of both dimers align, the complex is asymmetric in its details. At the centre of the interaction site, the Trp99 pair of CcdB stacks with the Arg462 pair of GyrA14, explaining why the Arg462Cys mutation in the A subunit of gyrase confers resistance to CcdB. Overexpression of GyrA14 protects Escherichia coli cells against CcdB, mimicking the action of the antidote CcdA.

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Year:  2005        PMID: 15854646     DOI: 10.1016/j.jmb.2005.03.049

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  53 in total

1.  The ParE2-PaaA2 toxin-antitoxin complex from Escherichia coli O157 forms a heterodocecamer in solution and in the crystal.

Authors:  Yann G J Sterckx; Abel Garcia-Pino; Sarah Haesaerts; Thomas Jové; Lieselotte Geerts; Viktor Sakellaris; Laurence Van Melderen; Remy Loris
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-25

2.  A high-throughput method for cloning and sequencing human immunodeficiency virus type 1 integration sites.

Authors:  Sanggu Kim; Yein Kim; Teresa Liang; Janet S Sinsheimer; Samson A Chow
Journal:  J Virol       Date:  2006-09-13       Impact factor: 5.103

3.  Mutagenesis-based definitions and probes of residue burial in proteins.

Authors:  Kanika Bajaj; Purbani Chakrabarti; Raghavan Varadarajan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-26       Impact factor: 11.205

4.  Addiction toxin Fst has unique effects on chromosome segregation and cell division in Enterococcus faecalis and Bacillus subtilis.

Authors:  S Patel; K E Weaver
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

5.  Molecular cloning of apicoplast-targeted Plasmodium falciparum DNA gyrase genes: unique intrinsic ATPase activity and ATP-independent dimerization of PfGyrB subunit.

Authors:  Mohd Ashraf Dar; Atul Sharma; Neelima Mondal; Suman Kumar Dhar
Journal:  Eukaryot Cell       Date:  2007-01-12

6.  Crystallization of the C-terminal domain of the addiction antidote CcdA in complex with its toxin CcdB.

Authors:  Lieven Buts; Natalie De Jonge; Remy Loris; Lode Wyns; Minh-Hoa Dao-Thi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-09-30

7.  Driving forces of gyrase recognition by the addiction toxin CcdB.

Authors:  Mario Simic; Natalie De Jonge; Remy Loris; Gorazd Vesnaver; Jurij Lah
Journal:  J Biol Chem       Date:  2009-05-22       Impact factor: 5.157

8.  Influence of operator site geometry on transcriptional control by the YefM-YoeB toxin-antitoxin complex.

Authors:  Simon E S Bailey; Finbarr Hayes
Journal:  J Bacteriol       Date:  2008-11-21       Impact factor: 3.490

9.  Structural and thermodynamic characterization of Vibrio fischeri CcdB.

Authors:  Natalie De Jonge; Walter Hohlweg; Abel Garcia-Pino; Michal Respondek; Lieven Buts; Sarah Haesaerts; Jurij Lah; Klaus Zangger; Remy Loris
Journal:  J Biol Chem       Date:  2009-12-02       Impact factor: 5.157

10.  Rapid generation of random mutant libraries.

Authors:  Mary Abou-Nader; Michael J Benedik
Journal:  Bioeng Bugs       Date:  2010 Sep-Oct
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