Literature DB >> 15853269

Mistakes in medical ontologies: where do they come from and how can they be detected?

Werner Ceusters1, Barry Smith, Anand Kumar, Christoffel Dhaen.   

Abstract

We present the details of a methodology for quality assurance in large medical terminologies and describe three algorithms that can help terminology developers and users to identify potential mistakes. The methodology is based in part on linguistic criteria and in part on logical and ontological principles governing sound classifications. We conclude by outlining the results of applying the methodology in the form of a taxonomy different types of errors and potential errors detected in SNOMED-CT.

Mesh:

Year:  2004        PMID: 15853269

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  20 in total

1.  Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT.

Authors:  Duo Wei; Olivier Bodenreider
Journal:  Stud Health Technol Inform       Date:  2010

2.  Auditing as part of the terminology design life cycle.

Authors:  Hua Min; Yehoshua Perl; Yan Chen; Michael Halper; James Geller; Yue Wang
Journal:  J Am Med Inform Assoc       Date:  2006-08-23       Impact factor: 4.497

3.  Quality control for terms and definitions in ontologies and taxonomies.

Authors:  Jacob Köhler; Katherine Munn; Alexander Rüegg; Andre Skusa; Barry Smith
Journal:  BMC Bioinformatics       Date:  2006-04-19       Impact factor: 3.169

4.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

5.  Negative findings in electronic health records and biomedical ontologies: a realist approach.

Authors:  Werner Ceusters; Peter Elkin; Barry Smith
Journal:  Int J Med Inform       Date:  2007-03-21       Impact factor: 4.046

6.  Manual curation is not sufficient for annotation of genomic databases.

Authors:  William A Baumgartner; K Bretonnel Cohen; Lynne M Fox; George Acquaah-Mensah; Lawrence Hunter
Journal:  Bioinformatics       Date:  2007-07-01       Impact factor: 6.937

7.  Analysis of error concentrations in SNOMED.

Authors:  Michael Halper; Yue Wang; Hua Min; Yan Chen; George Hripcsak; Yehoshua Perl; Kent A Spackman
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

Review 8.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

9.  Automated comparative auditing of NCIT genomic roles using NCBI.

Authors:  Barry Cohen; Marc Oren; Hua Min; Yehoshua Perl; Michael Halper
Journal:  J Biomed Inform       Date:  2008-03-28       Impact factor: 6.317

10.  Structural group-based auditing of missing hierarchical relationships in UMLS.

Authors:  Yan Chen; Huanying Helen Gu; Yehoshua Perl; James Geller
Journal:  J Biomed Inform       Date:  2008-08-20       Impact factor: 6.317

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