Literature DB >> 15851065

Waste not, want not--transcript excess in multicellular eukaryotes.

Jürgen Brosius1.   

Abstract

There is growing evidence that mammalian genomes produce thousands of transcripts that do not encode proteins, and this RNA class might even rival the complexity of mRNAs. There is no doubt that a number of these non-protein-coding RNAs have important regulatory functions in the cell. However, do all transcripts have a function or are many of them products of fortuitous transcription with no function? The second scenario is mirrored by numerous alternative-splicing events that lead to truncated proteins. Nevertheless, analogous to 'superfluous' genomic DNA, aberrant transcripts or processing products embody evolutionary potential and provide novel RNAs that natural selection can act on.

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Year:  2005        PMID: 15851065     DOI: 10.1016/j.tig.2005.02.014

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  62 in total

Review 1.  Long non-coding RNAs in corticogenesis: deciphering the non-coding code of the brain.

Authors:  Julieta Aprea; Federico Calegari
Journal:  EMBO J       Date:  2015-10-29       Impact factor: 11.598

2.  Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma.

Authors:  Chiara Braconi; Nicola Valeri; Takayuki Kogure; Pierluigi Gasparini; Nianyuan Huang; Gerard J Nuovo; Luigi Terracciano; Carlo M Croce; Tushar Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

3.  Evolutionary fate of retroposed gene copies in the human genome.

Authors:  Nicolas Vinckenbosch; Isabelle Dupanloup; Henrik Kaessmann
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

4.  Specific expression of long noncoding RNAs in the mouse brain.

Authors:  Tim R Mercer; Marcel E Dinger; Susan M Sunkin; Mark F Mehler; John S Mattick
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

5.  Application of housekeeping npcRNAs for quantitative expression analysis of human transcriptome by real-time PCR.

Authors:  Chenna R Galiveti; Timofey S Rozhdestvensky; Jürgen Brosius; Hans Lehrach; Zoltán Konthur
Journal:  RNA       Date:  2009-12-29       Impact factor: 4.942

Review 6.  Non-coding RNA transcripts: sensors of neuronal stress, modulators of synaptic plasticity, and agents of change in the onset of Alzheimer's disease.

Authors:  Georges St Laurent; Mohammad Ali Faghihi; Claes Wahlestedt
Journal:  Neurosci Lett       Date:  2009-08-20       Impact factor: 3.046

7.  Transcriptional interference by small transcripts in proximal promoter regions.

Authors:  Amit Pande; Jürgen Brosius; Izabela Makalowska; Wojciech Makalowski; Carsten A Raabe
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

8.  cDNA library generation from ribonucleoprotein particles.

Authors:  Mathieu Rederstorff; Alexander Hüttenhofer
Journal:  Nat Protoc       Date:  2011-01-27       Impact factor: 13.491

9.  Mining mammalian transcript data for functional long non-coding RNAs.

Authors:  Amit N Khachane; Paul M Harrison
Journal:  PLoS One       Date:  2010-04-23       Impact factor: 3.240

10.  Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer.

Authors:  Nuankanya Sathira; Riu Yamashita; Kousuke Tanimoto; Akinori Kanai; Takako Arauchi; Soutaro Kanematsu; Kenta Nakai; Yutaka Suzuki; Sumio Sugano
Journal:  DNA Res       Date:  2010-04-17       Impact factor: 4.458

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