Literature DB >> 15848239

Spectral representation--analyzing single-unit activity in extracellularly recorded neuronal data without spike sorting.

Artur Luczak1, Nandakumar S Narayanan.   

Abstract

One step in the conventional analysis of extracellularly recorded neuronal data is spike sorting, which separates electrical signal into action potentials from different neurons. Because spike sorting involves human judgment, it can be subjective and time intensive, particularly for large sets of neurons. Here we propose a simple, automated way to construct alternative representations of neuronal activity, called spectral representation (SR). In this approach, neuronal spikes are mapped to a discrete space of spike waveform features and time. Spectral representation enables us to find single-unit stimulus-related changes in neuronal activity without spike sorting. We tested the ability of this method to predict stimuli using both simulated data and experimental data from an auditory mapping study in anesthetized marmoset monkeys. We find that our approach produces more accurate classification of stimuli than spike-sorted data for both simulated and experimental conditions. Furthermore, this method lends itself to automated analysis of extracellularly recorded neuronal ensembles. Additionally, we suggest ways in which these representations can be readily extended to assist in spike sorting and the evaluation of single-neuron peri-stimulus time histograms.

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Mesh:

Year:  2005        PMID: 15848239     DOI: 10.1016/j.jneumeth.2004.10.009

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  9 in total

1.  Recording large-scale neuronal ensembles with silicon probes in the anesthetized rat.

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Journal:  J Vis Exp       Date:  2011-10-19       Impact factor: 1.355

2.  Wavelet methodology to improve single unit isolation in primary motor cortex cells.

Authors:  Alexis Ortiz-Rosario; Hojjat Adeli; John A Buford
Journal:  J Neurosci Methods       Date:  2015-03-17       Impact factor: 2.390

3.  Bayesian decoding using unsorted spikes in the rat hippocampus.

Authors:  Fabian Kloosterman; Stuart P Layton; Zhe Chen; Matthew A Wilson
Journal:  J Neurophysiol       Date:  2013-10-02       Impact factor: 2.714

4.  Clusterless Decoding of Position from Multiunit Activity Using a Marked Point Process Filter.

Authors:  Xinyi Deng; Daniel F Liu; Kenneth Kay; Loren M Frank; Uri T Eden
Journal:  Neural Comput       Date:  2015-05-14       Impact factor: 2.026

5.  Automatic online spike sorting with singular value decomposition and fuzzy C-mean clustering.

Authors:  Andriy Oliynyk; Claudio Bonifazzi; Fernando Montani; Luciano Fadiga
Journal:  BMC Neurosci       Date:  2012-08-08       Impact factor: 3.288

6.  Epileptic seizures and link to memory processes.

Authors:  Ritwik Das; Artur Luczak
Journal:  AIMS Neurosci       Date:  2022-03-07

7.  Combining backpropagation with Equilibrium Propagation to improve an Actor-Critic reinforcement learning framework.

Authors:  Yoshimasa Kubo; Eric Chalmers; Artur Luczak
Journal:  Front Comput Neurosci       Date:  2022-08-23       Impact factor: 3.387

8.  A model-based spike sorting algorithm for removing correlation artifacts in multi-neuron recordings.

Authors:  Jonathan W Pillow; Jonathon Shlens; E J Chichilnisky; Eero P Simoncelli
Journal:  PLoS One       Date:  2013-05-03       Impact factor: 3.240

9.  Involvement of fast-spiking cells in ictal sequences during spontaneous seizures in rats with chronic temporal lobe epilepsy.

Authors:  Adam R Neumann; Robrecht Raedt; Hendrik W Steenland; Mathieu Sprengers; Katarzyna Bzymek; Zaneta Navratilova; Lilia Mesina; Jeanne Xie; Valerie Lapointe; Fabian Kloosterman; Kristl Vonck; Paul A J M Boon; Ivan Soltesz; Bruce L McNaughton; Artur Luczak
Journal:  Brain       Date:  2017-09-01       Impact factor: 15.255

  9 in total

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