Literature DB >> 15840811

Editing efficiency of a Drosophila gene correlates with a distant splice site selection.

Ritesh Agrawal1, Gary D Stormo.   

Abstract

RNA editing and alternative splicing are two processes that increase protein diversity. The relationship between the two processes is not well understood. There are a few examples of correlations between editing and alternative splicing, but these are all nearby effects. A search for alternative splicing among 16 edited genes in Drosophila reveals two novel instances of alternative splicing. In one example where alternative splicing occurs downstream of editing, a strong correlation between editing efficiency and splice site selection is observed. In contrast, when editing occurs downstream of alternative splicing, no correlation is seen. These results suggest some models for the coupling of editing and splicing processes.

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Year:  2005        PMID: 15840811      PMCID: PMC1370744          DOI: 10.1261/rna.7280605

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  22 in total

1.  The mle(napts) RNA helicase mutation in drosophila results in a splicing catastrophe of the para Na+ channel transcript in a region of RNA editing.

Authors:  R A Reenan; C J Hanrahan; B Ganetzky
Journal:  Neuron       Date:  2000-01       Impact factor: 17.173

Review 2.  RNA editing by adenosine deaminases that act on RNA.

Authors:  Brenda L Bass
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

3.  Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants.

Authors:  Leath A Tonkin; Brenda L Bass
Journal:  Science       Date:  2003-12-05       Impact factor: 47.728

4.  Alu-containing exons are alternatively spliced.

Authors:  Rotem Sorek; Gil Ast; Dan Graur
Journal:  Genome Res       Date:  2002-07       Impact factor: 9.043

5.  Estimating rates of alternative splicing in mammals and invertebrates.

Authors:  Heebal Kim; Robert Klein; Jacek Majewski; Jurg Ott
Journal:  Nat Genet       Date:  2004-09       Impact factor: 38.330

6.  Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene.

Authors:  Rachel Flomen; Joanne Knight; Pak Sham; Robert Kerwin; Andrew Makoff
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

7.  Underediting of glutamate receptor GluR-B mRNA in malignant gliomas.

Authors:  S Maas; S Patt; M Schrey; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

8.  A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity.

Authors:  M J Palladino; L P Keegan; M A O'Connell; R A Reenan
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

9.  Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human.

Authors:  Francis Clark; T A Thanaraj
Journal:  Hum Mol Genet       Date:  2002-02-15       Impact factor: 6.150

10.  Novel putative nicotinic acetylcholine receptor subunit genes, Dalpha5, Dalpha6 and Dalpha7, in Drosophila melanogaster identify a new and highly conserved target of adenosine deaminase acting on RNA-mediated A-to-I pre-mRNA editing.

Authors:  M Grauso; R A Reenan; E Culetto; D B Sattelle
Journal:  Genetics       Date:  2002-04       Impact factor: 4.562

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  10 in total

1.  An editor controlled by transcription.

Authors:  Eva M Riedmann; Michael F Jantsch
Journal:  EMBO Rep       Date:  2006-03       Impact factor: 8.807

2.  The C-terminal domain of RNA Pol II helps ensure that editing precedes splicing of the GluR-B transcript.

Authors:  Kicki Ryman; Nova Fong; Eva Bratt; David L Bentley; Marie Ohman
Journal:  RNA       Date:  2007-05-24       Impact factor: 4.942

Review 3.  The emerging role of RNA editing in plasticity.

Authors:  Joshua J C Rosenthal
Journal:  J Exp Biol       Date:  2015-06       Impact factor: 3.312

4.  Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR).

Authors:  Oz Solomon; Shirley Oren; Michal Safran; Naamit Deshet-Unger; Pinchas Akiva; Jasmine Jacob-Hirsch; Karen Cesarkas; Reut Kabesa; Ninette Amariglio; Ron Unger; Gideon Rechavi; Eran Eyal
Journal:  RNA       Date:  2013-03-08       Impact factor: 4.942

5.  RNA-editing-mediated exon evolution.

Authors:  Galit Lev-Maor; Rotem Sorek; Erez Y Levanon; Nurit Paz; Eli Eisenberg; Gil Ast
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

Review 6.  The dynamic epitranscriptome: A to I editing modulates genetic information.

Authors:  Mansoureh Tajaddod; Michael F Jantsch; Konstantin Licht
Journal:  Chromosoma       Date:  2015-07-07       Impact factor: 4.316

7.  RNA editing in nascent RNA affects pre-mRNA splicing.

Authors:  Yun-Hua Esther Hsiao; Jae Hoon Bahn; Yun Yang; Xianzhi Lin; Stephen Tran; Ei-Wen Yang; Giovanni Quinones-Valdez; Xinshu Xiao
Journal:  Genome Res       Date:  2018-05-03       Impact factor: 9.043

8.  RNA editing and alternative splicing of the insect nAChR subunit alpha6 transcript: evolutionary conservation, divergence and regulation.

Authors:  Yongfeng Jin; Nan Tian; Jun Cao; Jing Liang; Zhaolin Yang; Jianning Lv
Journal:  BMC Evol Biol       Date:  2007-06-27       Impact factor: 3.260

9.  Regulation of glutamate receptor B pre-mRNA splicing by RNA editing.

Authors:  Vera K Schoft; Sandy Schopoff; Michael F Jantsch
Journal:  Nucleic Acids Res       Date:  2007-05-21       Impact factor: 16.971

10.  The cys-loop ligand-gated ion channel gene superfamily of the red flour beetle, Tribolium castaneum.

Authors:  Andrew K Jones; David B Sattelle
Journal:  BMC Genomics       Date:  2007-09-19       Impact factor: 3.969

  10 in total

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