Literature DB >> 15840704

S-SPatt: simple statistics for patterns on Markov chains.

Grégory Nuel1.   

Abstract

SUMMARY: S-SPatt allows the counting of patterns occurrences in text files and, assuming these texts are generated from a random Markovian source, the computation of the P-value of a given observation using a simple binomial approximation.

Mesh：

Year:  2005        PMID： 15840704     DOI： 10.1093/bioinformatics/bti451

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

Review 1.  DNA motifs that sculpt the bacterial chromosome.

Authors:  Fabrice Touzain; Marie-Agnès Petit; Sophie Schbath; Meriem El Karoui
Journal:  Nat Rev Microbiol       Date:  2011-01       Impact factor: 60.633

2.  Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics.

Authors:  Grégory Nuel
Journal:  Algorithms Mol Biol       Date:  2006-04-07       Impact factor: 1.405

3.  Mining protein loops using a structural alphabet and statistical exceptionality.

Authors:  Leslie Regad; Juliette Martin; Gregory Nuel; Anne-Claude Camproux
Journal:  BMC Bioinformatics       Date:  2010-02-04       Impact factor: 3.169

4.  Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs.

Authors:  Leslie Regad; Juliette Martin; Anne-Claude Camproux
Journal:  BMC Bioinformatics       Date:  2011-06-20       Impact factor: 3.169

5.  Pattern statistics on Markov chains and sensitivity to parameter estimation.

Authors:  Grégory Nuel
Journal:  Algorithms Mol Biol       Date:  2006-10-17       Impact factor: 1.405
  5 in total

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