Literature DB >> 15829728

Peditree: pedigree database analysis and visualization for breeding and science.

R van Berloo1, R C B Hutten.   

Abstract

At the Wageningen Laboratory of Plant Breeding, a software package has been developed to query a simple structured database with variety pedigree data. The package, called Peditree, creates a tree-shaped representation of pedigree information and has several visualization and lookup options. Estimates of inbreeding coefficient within a pedigree or coefficients of coancestry among pedigrees can be obtained. Furthermore trait data--if available--can be linked, displayed within the pedigree tree, and used to highlight pedigree entries that comply with set criteria.

Mesh:

Year:  2005        PMID: 15829728     DOI: 10.1093/jhered/esi059

Source DB:  PubMed          Journal:  J Hered        ISSN: 0022-1503            Impact factor:   2.645


  10 in total

1.  GRFT - Genetic Records Family Tree Web Applet.

Authors:  Samuel Pimentel; Virginia Walbot; John Fernandes
Journal:  Front Genet       Date:  2011-03-25       Impact factor: 4.599

2.  A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues.

Authors:  T C Marcel; R K Varshney; M Barbieri; H Jafary; M J D de Kock; A Graner; R E Niks
Journal:  Theor Appl Genet       Date:  2006-11-18       Impact factor: 5.699

3.  SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanum species.

Authors:  Vivianne G A A Vleeshouwers; Richard Finkers; Dirk Budding; Marcel Visser; Mirjam M J Jacobs; Ralph van Berloo; Mathieu Pel; Nicolas Champouret; Erin Bakker; Pavel Krenek; Hendrik Rietman; DirkJan Huigen; Roel Hoekstra; Aska Goverse; Ben Vosman; Evert Jacobsen; Richard G F Visser
Journal:  BMC Plant Biol       Date:  2011-08-18       Impact factor: 4.215

4.  Genetic Diversity Trends in the Cultivated Potato: A Spatiotemporal Overview.

Authors:  Martin Spanoghe; Thierry Marique; Alexandra Nirsha; Florence Esnault; Deborah Lanterbecq
Journal:  Biology (Basel)       Date:  2022-04-15

5.  Helium: visualization of large scale plant pedigrees.

Authors:  Paul D Shaw; Martin Graham; Jessie Kennedy; Iain Milne; David F Marshall
Journal:  BMC Bioinformatics       Date:  2014-08-01       Impact factor: 3.169

6.  Analysis of diversity and linkage disequilibrium along chromosome 3B of bread wheat (Triticum aestivum L.).

Authors:  Aniko Horvath; Audrey Didier; Jean Koenig; Florence Exbrayat; Gilles Charmet; François Balfourier
Journal:  Theor Appl Genet       Date:  2009-09-16       Impact factor: 5.699

7.  Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration.

Authors:  Claude Urbany; Benjamin Stich; Lysann Schmidt; Ludwig Simon; Hergen Berding; Holger Junghans; Karl-Heinz Niehoff; Alexander Braun; Eckhard Tacke; Hans-Rheinhardt Hofferbert; Jens Lübeck; Josef Strahwald; Christiane Gebhardt
Journal:  BMC Genomics       Date:  2011-01-05       Impact factor: 3.969

8.  VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees.

Authors:  Trevor Paterson; Martin Graham; Jessie Kennedy; Andy Law
Journal:  BMC Bioinformatics       Date:  2012-05-18       Impact factor: 3.169

9.  Pedimap: software for the visualization of genetic and phenotypic data in pedigrees.

Authors:  Roeland E Voorrips; Marco C A M Bink; W Eric van de Weg
Journal:  J Hered       Date:  2012-10-19       Impact factor: 2.645

10.  Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.

Authors:  Sofía I Deperi; Martín E Tagliotti; M Cecilia Bedogni; Norma C Manrique-Carpintero; Joseph Coombs; Ruofang Zhang; David Douches; Marcelo A Huarte
Journal:  PLoS One       Date:  2018-03-16       Impact factor: 3.240

  10 in total

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