Literature DB >> 15814554

EGene: a configurable pipeline generation system for automated sequence analysis.

Alan M Durham1, André Y Kashiwabara, Fernando T G Matsunaga, Paulo H Ahagon, Flávia Rainone, Leonardo Varuzza, Arthur Gruber.   

Abstract

UNLABELLED: EGene is a generic, flexible and modular pipeline generation system that makes pipeline construction a modular job. EGene allows for third-party programs to be used and integrated according to the needs of distinct projects and without any previous programming or formal language experience being required. EGene comes with CoEd, a visual tool to facilitate pipeline construction and documentation. A series of components to build pipelines for sequence processing is provided. AVAILABILITY: http://www.lbm.fmvz.usp.br/egene/ CONTACT: alan@ime.usp.br; argruber@usp.br SUPPLEMENTARY INFORMATION: http://www.lbm.fmvz.usp.br/egene/

Mesh：

Year:  2005        PMID： 15814554     DOI： 10.1093/bioinformatics/bti424

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  17 in total

1.  Identification of differentially expressed genes in female Drosophila antonietae and Drosophila meridionalis in response to host cactus odor.

Authors:  Camila M Borgonove; Carla B Cavallari; Mateus H Santos; Rafaela Rossetti; Klaus Hartfelder; Maura H Manfrin
Journal:  BMC Evol Biol       Date:  2014-09-02       Impact factor: 3.260

2.  Molecular characterization of Mycobacterium massiliense and Mycobacterium bolletii in isolates collected from outbreaks of infections after laparoscopic surgeries and cosmetic procedures.

Authors:  Cristina Viana-Niero; Karla Valéria Batista Lima; Maria Luiza Lopes; Michelle Christiane da Silva Rabello; Lourival Rodrigues Marsola; Vânia Cristina Ribeiro Brilhante; Alan Mitchel Durham; Sylvia Cardoso Leão
Journal:  J Clin Microbiol       Date:  2008-01-03       Impact factor: 5.948

3.  The Eimeria transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria.

Authors:  Luiz Thibério Rangel; Jeniffer Novaes; Alan M Durham; Alda Maria B N Madeira; Arthur Gruber
Journal:  Database (Oxford)       Date:  2013-02-14       Impact factor: 3.451

4.  Suppression subtractive hybridization analysis reveals expression of conserved and novel genes in male accessory glands of the ant Leptothorax gredleri.

Authors:  Angelika Oppelt; Fernanda C Humann; Marion Fuessl; Sergio V Azevedo; David S Marco Antonio; Jürgen Heinze; Klaus Hartfelder
Journal:  BMC Evol Biol       Date:  2010-09-08       Impact factor: 3.260

5.  Expressed sequence tags from Atta laevigata and identification of candidate genes for the control of pest leaf-cutting ants.

Authors:  Cynara M Rodovalho; Milene Ferro; Fernando Pp Fonseca; Erik A Antonio; Ivan R Guilherme; Flávio Henrique-Silva; Maurício Bacci
Journal:  BMC Res Notes       Date:  2011-06-17

6.  JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Authors:  Mariano Latorre; Herman Silva; Juan Saba; Carito Guziolowski; Paula Vizoso; Veronica Martinez; Jonathan Maldonado; Andrea Morales; Rodrigo Caroca; Veronica Cambiazo; Reinaldo Campos-Vargas; Mauricio Gonzalez; Ariel Orellana; Julio Retamales; Lee A Meisel
Journal:  BMC Bioinformatics       Date:  2006-11-23       Impact factor: 3.169

7.  Workflow management systems for gene sequence analysis and evolutionary studies - A Review.

Authors:  Anu Sharma; Anil Rai; Sb Lal
Journal:  Bioinformation       Date:  2013-07-17

8.  A transcriptome analysis of the Aedes aegypti vitellogenic fat body.

Authors:  Fabiana M Feitosa; Eric Calvo; Emilio F Merino; Alan M Durham; Anthony A James; Antonio G de Bianchi; Osvaldo Marinotti; Margareth L Capurro
Journal:  J Insect Sci       Date:  2006       Impact factor: 1.857

9.  XiP: a computational environment to create, extend and share workflows.

Authors:  Masao Nagasaki; André Fujita; Yayoi Sekiya; Ayumu Saito; Emi Ikeda; Chen Li; Satoru Miyano
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

10.  Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm of PRA-hsp65 patterns.

Authors:  Erica Chimara; Lucilaine Ferrazoli; Suely Yoko Misuka Ueky; Maria Conceição Martins; Alan Mitchel Durham; Robert D Arbeit; Sylvia Cardoso Leão
Journal:  BMC Microbiol       Date:  2008-03-20       Impact factor: 3.605
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.