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Literature DB >> 15814025

DNA methylation, nucleosome formation and positioning.

Sari Pennings¹, James Allan, Colin S Davey.

Abstract

Recent mapping of nucleosome positioning on several long gene regions subject to DNA methylation has identified instances of nucleosome repositioning by this base modification. The evidence for an effect of CpG methylation on nucleosome formation and positioning in chromatin is reviewed here in the context of the complex sequence-structure requirements of DNA wrapping around the histone octamer and the role of this epigenetic mark in gene repression.

Entities: Gene

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Year: 2005 PMID： 15814025 DOI： 10.1093/bfgp/3.4.351

Source DB: PubMed Journal: Brief Funct Genomic Proteomic ISSN： 1473-9550

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Cited

33 in total

1. The mutational spectrum of non-CpG DNA varies with CpG content.

Authors: Jean-Claude Walser; Anthony V Furano
Journal: Genome Res Date: 2010-05-24 Impact factor: 9.043

Review 2. Double-strand breaks and the concept of short- and long-term epigenetic memory.

Authors: Christian Orlowski; Li-Jeen Mah; Raja S Vasireddy; Assam El-Osta; Tom C Karagiannis
Journal: Chromosoma Date: 2010-12-21 Impact factor: 4.316

3. CpG dinucleotides and the mutation rate of non-CpG DNA.

Authors: Jean-Claude Walser; Loïc Ponger; Anthony V Furano
Journal: Genome Res Date: 2008-06-11 Impact factor: 9.043

4. Dynamics of nucleosome assembly and effects of DNA methylation.

Authors: Ju Yeon Lee; Jaehyoun Lee; Hongjun Yue; Tae-Hee Lee
Journal: J Biol Chem Date: 2014-12-29 Impact factor: 5.157

5. Optical Trapping Nanometry of Hypermethylated CPG-Island DNA.

Authors: Csaba I Pongor; Pasquale Bianco; György Ferenczy; Richárd Kellermayer; Miklós Kellermayer
Journal: Biophys J Date: 2017-01-18 Impact factor: 4.033

6. Regulatory cis-elements are located in accessible promoter regions of the CAT2 promoter and affect activating histone modifications in Arabidopsis thaliana.

Authors: Miriam Laxa
Journal: Plant Mol Biol Date: 2016-10-12 Impact factor: 4.076

DNA methylation, nucleosome formation and positioning.

1. The mutational spectrum of non-CpG DNA varies with CpG content.

Review 2. Double-strand breaks and the concept of short- and long-term epigenetic memory.

3. CpG dinucleotides and the mutation rate of non-CpG DNA.

4. Dynamics of nucleosome assembly and effects of DNA methylation.

5. Optical Trapping Nanometry of Hypermethylated CPG-Island DNA.

6. Regulatory cis-elements are located in accessible promoter regions of the CAT2 promoter and affect activating histone modifications in Arabidopsis thaliana.

7. Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island.

8. Repertoires of the nucleosome-positioning dinucleotides.

9. Lsh mediated RNA polymerase II stalling at HoxC6 and HoxC8 involves DNA methylation.

10. Nucleosome deposition and DNA methylation at coding region boundaries.