Literature DB >> 15810813

IR study of cross-strand coupling in a beta-hairpin peptide using isotopic labels.

Vladimír Setnicka1, Rong Huang, Catherine L Thomas, Marcus A Etienne, Jan Kubelka, Robert P Hammer, Timothy A Keiderling.   

Abstract

Model beta-hairpin peptides can be used to develop understanding of fundamental elements of beta-sheet secondary structure formation and stability. We have studied two 13C-labeled variants of a beta-hairpin peptide modified from a design originally proposed by Gellman: Arg-Tyr-Val-Glu-Val-Aib-Gly-Lys-Lys-Ile-Leu-Gln. (In this peptide, the two italicized residues form a beta-turn, while 13C-labels are on the amide C=O of Val3, Lys8 in HBG-L and Val3, Ile10 in HBG-S.) Both these peptides are labeled on opposite strands of the hairpin, but differ in the labeling pattern. One (HBG-L) forms a large (14-atom) H-bonded ring of labeled C=Os, while the other (HBG-S) forms a small (10-atom) H-bonded ring. These impact the amide I infrared spectra, with HBG-L having a 13C frequency and intensity higher than that of HBG-S, in good agreement with our spectral simulations based on quantum mechanically derived force fields. The thermal behavior of both peptides yields a broad thermal transition and lacks an isosbestic point. The 13C band for HBG-L has the largest intensity change with temperature, distinct from the 12C change and the HBG-S 13C change.

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Year:  2005        PMID: 15810813     DOI: 10.1021/ja043007f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

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2.  Intersheet rearrangement of polypeptides during nucleation of {beta}-sheet aggregates.

Authors:  Sarah A Petty; Sean M Decatur
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-21       Impact factor: 11.205

3.  Local structure of beta-hairpin isotopomers by FTIR, 2D IR, and ab initio theory.

Authors:  Jianping Wang; Jianxin Chen; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2006-04-13       Impact factor: 2.991

4.  An infrared spectroscopic study of the conformational transition of elastin-like polypeptides.

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Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

5.  Minimization and optimization of designed beta-hairpin folds.

Authors:  Niels H Andersen; Katherine A Olsen; R Matthew Fesinmeyer; Xu Tan; F Michael Hudson; Lisa A Eidenschink; Shabnam R Farazi
Journal:  J Am Chem Soc       Date:  2006-05-10       Impact factor: 15.419

Review 6.  Empirical amide I vibrational frequency map: application to 2D-IR line shapes for isotope-edited membrane peptide bundles.

Authors:  Y-S Lin; J M Shorb; P Mukherjee; M T Zanni; J L Skinner
Journal:  J Phys Chem B       Date:  2009-01-22       Impact factor: 2.991

7.  The effects of alpha-helical structure and cyanylated cysteine on each other.

Authors:  Lena Edelstein; Matthew A Stetz; Heather A McMahon; Casey H Londergan
Journal:  J Phys Chem B       Date:  2010-04-15       Impact factor: 2.991

8.  Diacid linkers that promote parallel beta-sheet secondary structure in water.

Authors:  Felix Freire; John D Fisk; Aaron J Peoples; Monika Ivancic; Ilia A Guzei; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2008-05-29       Impact factor: 15.419

9.  Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.

Authors:  Lisa Eidenschink; Brandon L Kier; Kelly N L Huggins; Niels H Andersen
Journal:  Proteins       Date:  2009-05-01

10.  The Amide I Spectrum of Proteins-Optimization of Transition Dipole Coupling Parameters Using Density Functional Theory Calculations.

Authors:  Cesare M Baronio; Andreas Barth
Journal:  J Phys Chem B       Date:  2020-02-20       Impact factor: 2.991

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