Literature DB >> 15808976

Unified SPM-ICA for fMRI analysis.

Dewen Hu1, Lirong Yan, Yadong Liu, Zongtan Zhou, Karl J Friston, Changlian Tan, Daxing Wu.   

Abstract

A widely used tool for functional magnetic resonance imaging (fMRI) data analysis, statistical parametric mapping (SPM), is based on the general linear model (GLM). SPM therefore requires a priori knowledge or specific assumptions about the time courses contributing to signal changes. In contradistinction, independent component analysis (ICA) is a data-driven method based on the assumption that the causes of responses are statistically independent. Here we describe a unified method, which combines ICA, temporal ICA (tICA), and SPM for analyzing fMRI data. tICA was applied to fMRI datasets to disclose independent components, whose number was determined by the Bayesian information criterion (BIC). The resulting components were used to construct the design matrix of a GLM. Parameters were estimated and regionally-specific statistical inferences were made about activations in the usual way. The sensitivity and specificity were evaluated using Monte Carlo simulations. The receiver operating characteristic (ROC) curves indicated that the unified SPM-ICA method had a better performance. Moreover, SPM-ICA was applied to fMRI datasets from twelve normal subjects performing left and right hand movements. The areas identified corresponded to motor (premotor, sensorimotor areas and SMA) areas and were consistently task related. Part of the frontal lobe, parietal cortex, and cingulate gyrus also showed transiently task-related responses. The unified method requires less supervision than the conventional SPM and enables classical inference about the expression of independent components. Our results also suggest that the method has a higher sensitivity than SPM analyses.

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Mesh:

Year:  2005        PMID: 15808976     DOI: 10.1016/j.neuroimage.2004.12.031

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  15 in total

1.  A new method for detecting causality in fMRI data of cognitive processing.

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2.  Improved application of independent component analysis to functional magnetic resonance imaging study via linear projection techniques.

Authors:  Zhiying Long; Kewei Chen; Xia Wu; Eric Reiman; Danling Peng; Li Yao
Journal:  Hum Brain Mapp       Date:  2009-02       Impact factor: 5.038

3.  Spinal fMRI during proprioceptive and tactile tasks in healthy subjects: Activity detected using cross-correlation, general linear model and independent component analysis.

Authors:  P Valsasina; F Agosta; D Caputo; P W Stroman; M Filippi
Journal:  Neuroradiology       Date:  2008-06-17       Impact factor: 2.804

4.  Adaptive smoothing based on Gaussian processes regression increases the sensitivity and specificity of fMRI data.

Authors:  Francesca Strappini; Elad Gilboa; Sabrina Pitzalis; Kendrick Kay; Mark McAvoy; Arye Nehorai; Abraham Z Snyder
Journal:  Hum Brain Mapp       Date:  2016-12-10       Impact factor: 5.038

5.  The absence of task-related increases in BOLD signal does not equate to absence of task-related brain activation.

Authors:  Jiansong Xu; Vince D Calhoun; Marc N Potenza
Journal:  J Neurosci Methods       Date:  2014-11-15       Impact factor: 2.390

6.  Comparison of fMRI analysis methods for heterogeneous BOLD responses in block design studies.

Authors:  Jia Liu; Ben A Duffy; David Bernal-Casas; Zhongnan Fang; Jin Hyung Lee
Journal:  Neuroimage       Date:  2016-12-16       Impact factor: 6.556

7.  A topographic latent source model for fMRI data.

Authors:  Samuel J Gershman; David M Blei; Francisco Pereira; Kenneth A Norman
Journal:  Neuroimage       Date:  2011-04-28       Impact factor: 6.556

Review 8.  Electromyogenic artifacts and electroencephalographic inferences.

Authors:  Alexander J Shackman; Brenton W McMenamin; Heleen A Slagter; Jeffrey S Maxwell; Lawrence L Greischar; Richard J Davidson
Journal:  Brain Topogr       Date:  2009-02-12       Impact factor: 3.020

9.  The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software tools.

Authors:  Ivo D Dinov; Petros Petrosyan; Zhizhong Liu; Paul Eggert; Alen Zamanyan; Federica Torri; Fabio Macciardi; Sam Hobel; Seok Woo Moon; Young Hee Sung; Zhiguo Jiang; Jennifer Labus; Florian Kurth; Cody Ashe-McNalley; Emeran Mayer; Paul M Vespa; John D Van Horn; Arthur W Toga
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

10.  A hybrid SVM-GLM approach for fMRI data analysis.

Authors:  Ze Wang
Journal:  Neuroimage       Date:  2009-03-19       Impact factor: 6.556

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