Literature DB >> 1579458

Parallel analysis of oligodeoxyribonucleotide (oligonucleotide) interactions. I. Analysis of factors influencing oligonucleotide duplex formation.

U Maskos1, E M Southern.   

Abstract

A novel method for the analysis of oligonucleotide-oligonucleotide interactions is described. Oligonucleotides of different sequence are synthesised in situ as stripes on the surface of a glass slide (see accompanying paper). Multiple hybridizations are then carried out on each oligonucleotide simultaneously to determine the dependence of oligonucleotide duplex formation on duplex length, base composition, hybridisation solvent and sequence complexity.

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Year:  1992        PMID： 1579458      PMCID： PMC312255          DOI： 10.1093/nar/20.7.1675

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  12 in total

1.  DNA melting temperatures and renaturation rates in concentrated alkylammonium salt solutions.

Authors:  J M Orosz; J G Wetmur
Journal:  Biopolymers       Date:  1977-06       Impact factor: 2.505

2.  Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.

Authors:  R K Saiki; D H Gelfand; S Stoffel; S J Scharf; R Higuchi; G T Horn; K B Mullis; H A Erlich
Journal:  Science       Date:  1988-01-29       Impact factor: 47.728

3.  Effects of microscopic and macroscopic viscosity on the rate of renaturation of DNA.

Authors:  C T Chang; T C Hain; J R Hutton; J G Wetmur
Journal:  Biopolymers       Date:  1974       Impact factor: 2.505

4.  Synthesis and properties of oligonucleotide--cellulose columns.

Authors:  C R Astell; M Smith
Journal:  Biochemistry       Date:  1972-10-24       Impact factor: 3.162

5.  Kinetics of renaturation of DNA.

Authors:  J G Wetmur; N Davidson
Journal:  J Mol Biol       Date:  1968-02-14       Impact factor: 5.469

6.  Alteration of the relative stability of dA-dT and dG-dC base pairs in DNA.

Authors:  W B Melchior; P H Von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1973-02       Impact factor: 11.205

7.  The use of oligodeoxynucleotide probes in chaotrope-based hybridization solutions.

Authors:  J Van Ness; L Chen
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

8.  Single-base mutational analysis of cancer and genetic diseases using membrane bound modified oligonucleotides.

Authors:  Y Zhang; M Y Coyne; S G Will; C H Levenson; E S Kawasaki
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

9.  Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes.

Authors:  R K Saiki; P S Walsh; C H Levenson; H A Erlich
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

10.  The thermal stability of oligonucleotide duplexes is sequence independent in tetraalkylammonium salt solutions: application to identifying recombinant DNA clones.

Authors:  K A Jacobs; R Rudersdorf; S D Neill; J P Dougherty; E L Brown; E F Fritsch
Journal:  Nucleic Acids Res       Date:  1988-05-25       Impact factor: 16.971
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  29 in total

1.  Mutation detection by stacking hybridization on genosensor arrays.

Authors:  R Maldonado-Rodriguez; M Espinosa-Lara; P Loyola-Abitia; W G Beattie; K L Beattie
Journal:  Mol Biotechnol       Date:  1999-02       Impact factor: 2.695

2.  Characterization of oligodeoxyribonucleotide synthesis on glass plates.

Authors:  E LeProust; H Zhang; P Yu; X Zhou; X Gao
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

3.  High-throughput detection of pathogenic yeasts of the genus trichosporon.

Authors:  Mara R Diaz; Jack W Fell
Journal:  J Clin Microbiol       Date:  2004-08       Impact factor: 5.948

4.  Hybridization of DNA targets to glass-tethered oligonucleotide probes.

Authors:  W G Beattie; L Meng; S L Turner; R S Varma; D D Dao; K L Beattie
Journal:  Mol Biotechnol       Date:  1995-12       Impact factor: 2.695

5.  Hamming chromatography.

Authors:  A Schwienhorst; A Schober; R Günther; P F Stadler
Journal:  Mol Divers       Date:  1996-05       Impact factor: 2.943

6.  Light-directed synthesis of high-density oligonucleotide arrays using semiconductor photoresists.

Authors:  G McGall; J Labadie; P Brock; G Wallraff; T Nguyen; W Hinsberg
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

7.  Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays.

Authors:  M S Shchepinov; S C Case-Green; E M Southern
Journal:  Nucleic Acids Res       Date:  1997-03-15       Impact factor: 16.971

8.  Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology.

Authors:  D Y Guschin; B K Mobarry; D Proudnikov; D A Stahl; B E Rittmann; A D Mirzabekov
Journal:  Appl Environ Microbiol       Date:  1997-06       Impact factor: 4.792

9.  16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales".

Authors:  Alexander Loy; Claudia Schulz; Sebastian Lücker; Andreas Schöpfer-Wendels; Kilian Stoecker; Christian Baranyi; Angelika Lehner; Michael Wagner
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

10.  A study of oligonucleotide reassociation using large arrays of oligonucleotides synthesised on a glass support.

Authors:  U Maskos; E M Southern
Journal:  Nucleic Acids Res       Date:  1993-10-11       Impact factor: 16.971
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