Literature DB >> 15788530

Contingent gene regulatory networks and B cell fate specification.

Harinder Singh1, Kay L Medina, Jagan M R Pongubala.   

Abstract

The B cell developmental pathway represents a leading system for the analysis of regulatory circuits that orchestrate cell fate specification and commitment. Considerable progress has been achieved within the past decade in the identification and genetic analysis of various regulatory components. These components include the transcription factors PU.1, Ikaros, Bcl11a, E2A, EBF, and Pax-5, as well as the cytokine receptors Flk2 and IL-7R. Experimental evidence of connectivity among the regulatory components is used to assemble sequentially acting and contingent gene regulatory networks. Transient signaling inputs, self-sustaining positive feedback loops, and cross-antagonism among alternate cell fate determinants are key features of the proposed networks that instruct the development of B lymphocyte precursors from hematopoietic stem cells.

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Year:  2005        PMID: 15788530      PMCID: PMC555998          DOI: 10.1073/pnas.0500480102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

1.  E2A and EBF act in synergy with the V(D)J recombinase to generate a diverse immunoglobulin repertoire in nonlymphoid cells.

Authors:  W J Romanow; A W Langerak; P Goebel; I L Wolvers-Tettero; J J van Dongen; A J Feeney; C Murre
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

2.  Essential functions of Pax5 (BSAP) in pro-B cell development: difference between fetal and adult B lymphopoiesis and reduced V-to-DJ recombination at the IgH locus.

Authors:  S L Nutt; P Urbánek; A Rolink; M Busslinger
Journal:  Genes Dev       Date:  1997-02-15       Impact factor: 11.361

Review 3.  Loops, lineage, and leukemia.

Authors:  T Enver; M Greaves
Journal:  Cell       Date:  1998-07-10       Impact factor: 41.582

Review 4.  The lineage commitment of haemopoietic progenitor cells.

Authors:  M A Cross; T Enver
Journal:  Curr Opin Genet Dev       Date:  1997-10       Impact factor: 5.578

5.  Coordinate regulation of B cell differentiation by the transcription factors EBF and E2A.

Authors:  M O'Riordan; R Grosschedl
Journal:  Immunity       Date:  1999-07       Impact factor: 31.745

6.  Bipotential B-macrophage progenitors are present in adult bone marrow.

Authors:  E Montecino-Rodriguez; H Leathers; K Dorshkind
Journal:  Nat Immunol       Date:  2001-01       Impact factor: 25.606

7.  Commitment to the B-lymphoid lineage depends on the transcription factor Pax5.

Authors:  S L Nutt; B Heavey; A G Rolink; M Busslinger
Journal:  Nature       Date:  1999-10-07       Impact factor: 49.962

8.  Notch inhibition of E47 supports the existence of a novel signaling pathway.

Authors:  P Ordentlich; A Lin; C P Shen; C Blaumueller; K Matsuno; S Artavanis-Tsakonas; T Kadesch
Journal:  Mol Cell Biol       Date:  1998-04       Impact factor: 4.272

9.  Interleukin-7 is necessary to maintain the B cell potential in common lymphoid progenitors.

Authors:  Sheila Dias; Hamilton Silva; Ana Cumano; Paulo Vieira
Journal:  J Exp Med       Date:  2005-03-14       Impact factor: 14.307

10.  Induction of early B cell factor (EBF) and multiple B lineage genes by the basic helix-loop-helix transcription factor E12.

Authors:  B L Kee; C Murre
Journal:  J Exp Med       Date:  1998-08-17       Impact factor: 14.307

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  75 in total

1.  An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells.

Authors:  Ipsita Banerjee; Spandan Maiti; Natesh Parashurama; Martin Yarmush
Journal:  Bioinformatics       Date:  2010-03-31       Impact factor: 6.937

2.  B cell specification from the genome up.

Authors:  Ellen V Rothenberg
Journal:  Nat Immunol       Date:  2010-07       Impact factor: 25.606

Review 3.  Gene regulatory networks for development.

Authors:  Michael Levine; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-23       Impact factor: 11.205

4.  Interlinked fast and slow positive feedback loops drive reliable cell decisions.

Authors:  Onn Brandman; James E Ferrell; Rong Li; Tobias Meyer
Journal:  Science       Date:  2005-10-21       Impact factor: 47.728

5.  Repression of Flt3 by Pax5 is crucial for B-cell lineage commitment.

Authors:  Melissa L Holmes; Sebastian Carotta; Lynn M Corcoran; Stephen L Nutt
Journal:  Genes Dev       Date:  2006-04-15       Impact factor: 11.361

Review 6.  Histone H3 variants and their potential role in indexing mammalian genomes: the "H3 barcode hypothesis".

Authors:  Sandra B Hake; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-29       Impact factor: 11.205

Review 7.  Extrinsic and intrinsic regulation of early natural killer cell development.

Authors:  Markus D Boos; Kevin Ramirez; Barbara L Kee
Journal:  Immunol Res       Date:  2008       Impact factor: 2.829

8.  Maps of cis-Regulatory Nodes in Megabase Long Genome Segments are an Inevitable Intermediate Step Toward Whole Genome Functional Mapping.

Authors:  Lev G Nikolaev; Sergey B Akopov; Igor P Chernov; Eugene D Sverdlov
Journal:  Curr Genomics       Date:  2007-04       Impact factor: 2.236

9.  IL-7 specifies B cell fate at the common lymphoid progenitor to pre-proB transition stage by maintaining early B cell factor expression.

Authors:  Kazu Kikuchi; Hirotake Kasai; Akiko Watanabe; Anne Y Lai; Motonari Kondo
Journal:  J Immunol       Date:  2008-07-01       Impact factor: 5.422

10.  Transcription factor E2-2 is an essential and specific regulator of plasmacytoid dendritic cell development.

Authors:  Babacar Cisse; Michele L Caton; Manfred Lehner; Takahiro Maeda; Stefanie Scheu; Richard Locksley; Dan Holmberg; Christiane Zweier; Nicolette S den Hollander; Sarina G Kant; Wolfgang Holter; Anita Rauch; Yuan Zhuang; Boris Reizis
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

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