Literature DB >> 15761718

Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.).

N H Syed1, S Sureshsundar, M J Wilkinson, B S Bhau, J J V Cavalcanti, A J Flavell.   

Abstract

The most popular retrotransposon-based molecular marker system in use at the present time is the sequence-specific amplification polymorphism (SSAP) system . This system exploits the insertional polymorphism of long terminal repeat (LTR) retrotransposons around the genome. Because the LTR sequence is used to design primers for this method, its successful application requires sequence information from the terminal region of the mobile elements . In this study, two LTR sequences were isolated from the cashew genome and used successfully to develop SSAP marker systems. These were shown to have higher levels of polymorphism than amplified fragment length polymorphic markers for this species.

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Year:  2005        PMID： 15761718     DOI： 10.1007/s00122-005-1948-1

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  19 in total

1.  Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies.

Authors:  S R Pearce; C Stuart-Rogers; M R Knox; A Kumar; T H Ellis; A J Flavell
Journal:  Plant J       Date:  1999-09       Impact factor: 6.417

2.  Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis.

Authors:  A J Flavell; M R Knox; S R Pearce; T H Ellis
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

3.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

4.  Characterization and genomic organization of Ty1-copia group retrotransposons in rye (Secale cereale).

Authors:  S R Pearce; G Harrison; P J Heslop-Harrison; A J Flavell; A Kumar
Journal:  Genome       Date:  1997-10       Impact factor: 2.166

5.  Development of S-SAP markers based on an LTR-like sequence from Medicago sativa L.

Authors:  A Porceddu; E Albertini; G Barcaccia; G Marconi; F B Bertoli; F Veronesi
Journal:  Mol Genet Genomics       Date:  2002-02-22       Impact factor: 3.291

6.  The Ty1-copia group retrotransposons of Allium cepa are distributed throughout the chromosomes but are enriched in the terminal heterochromatin.

Authors:  S R Pearce; U Pich; G Harrison; A J Flavell; J S Heslop-Harrison; I Schubert; A Kumar
Journal:  Chromosome Res       Date:  1996-08       Impact factor: 5.239

7.  The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution, and use as molecular markers.

Authors:  A Kumar; S R Pearce; K McLean; G Harrison; J S Heslop-Harrison; R Waugh; A J Flavell
Journal:  Genetica       Date:  1997       Impact factor: 1.082

8.  Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes.

Authors:  B M Gribbon; S R Pearce; R Kalendar; A H Schulman; L Paulin; P Jack; A Kumar; A J Flavell
Journal:  Mol Gen Genet       Date:  1999-07

9.  Comparative assessment of DNA fingerprinting techniques (RAPD, ISSR and AFLP) for genetic analysis of cashew (Anacardium occidentale L.) accessions of India.

Authors:  S Archak; A B Gaikwad; D Gautam; E V V B Rao; K R M Swamy; J L Karihaloo
Journal:  Genome       Date:  2003-06       Impact factor: 2.166

10.  The Ty1-copia group retrotransposons in Vicia species: copy number, sequence heterogeneity and chromosomal localisation.

Authors:  S R Pearce; G Harrison; D Li; J Heslop-Harrison; A Kumar; A J Flavell
Journal:  Mol Gen Genet       Date:  1996-02-25
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  16 in total

1.  Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers.

Authors:  Alberto Martín Sanz; Susana Gilsanz Gonzalez; Naeem Hasan Syed; Maria Jose Suso; Constantino Caminero Saldaña; Andrew J Flavell
Journal:  Mol Genet Genomics       Date:  2007-06-19       Impact factor: 3.291

Review 2.  Advances in molecular marker techniques and their applications in plant sciences.

Authors:  Milee Agarwal; Neeta Shrivastava; Harish Padh
Journal:  Plant Cell Rep       Date:  2008-02-02       Impact factor: 4.570

3.  Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome.

Authors:  Maura Lyons; Linda Cardle; Nils Rostoks; Robbie Waugh; Andrew J Flavell
Journal:  Mol Genet Genomics       Date:  2008-07-09       Impact factor: 3.291

4.  A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers.

Authors:  Naeem H Syed; Anker P Sørensen; Rudie Antonise; Clemens van de Wiel; C Gerard van der Linden; Wendy van 't Westende; Danny A P Hooftman; Hans C M den Nijs; Andrew J Flavell
Journal:  Theor Appl Genet       Date:  2005-12-10       Impact factor: 5.699

5.  Molecular markers based on LTR retrotransposons BARE-1 and Jeli uncover different strata of evolutionary relationships in diploid wheats.

Authors:  Fedor A Konovalov; Nikolay P Goncharov; Svetlana Goryunova; Aleksandra Shaturova; Tatyana Proshlyakova; Alexander Kudryavtsev
Journal:  Mol Genet Genomics       Date:  2010-04-21       Impact factor: 3.291

6.  Envelope-like retrotransposons in the plant kingdom: evidence of their presence in gymnosperms (Pinus pinaster).

Authors:  Célia Miguel; Marta Simões; Maria Margarida Oliveira; Margarida Rocheta
Journal:  J Mol Evol       Date:  2008-10-17       Impact factor: 2.395

7.  Genetic mapping of the apospory-specific genomic region in Pennisetum squamulatum using retrotransposon-based molecular markers.

Authors:  Heqiang Huo; Joann A Conner; Peggy Ozias-Akins
Journal:  Theor Appl Genet       Date:  2009-04-16       Impact factor: 5.699

8.  Comparison of anonymous and targeted molecular markers for the estimation of genetic diversity in ex situ conserved Lactuca.

Authors:  R van Treuren; Th J L van Hintum
Journal:  Theor Appl Genet       Date:  2009-08-21       Impact factor: 5.699

9.  High-throughput retrotransposon-based fluorescent markers: improved information content and allele discrimination.

Authors:  Maggie Knox; Carol Moreau; James Lipscombe; David Baker; Noel Ellis
Journal:  Plant Methods       Date:  2009-07-28       Impact factor: 4.993

10.  Advances in plant gene-targeted and functional markers: a review.

Authors:  Péter Poczai; Ildikó Varga; Maarja Laos; András Cseh; Neil Bell; Jari Pt Valkonen; Jaakko Hyvönen
Journal:  Plant Methods       Date:  2013-02-13       Impact factor: 4.993
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