Literature DB >> 15755444

Correlation between omega and psi dihedral angles in protein structures.

Luciana Esposito1, Alfonso De Simone, Adriana Zagari, Luigi Vitagliano.   

Abstract

The planarity of the peptide group is one of the fundamental features of protein structure that is described in every chemistry and biochemistry textbook. By surveying a dataset of 163 atomic resolution protein structures we here identify the stereochemical conditions that favor significant deformations of peptide bond planarity. In particular, we demonstrate that the values of the omega dihedral angle are strictly correlated to the values of the adjacent psi angle. This trend is also observed in highly strained states such as those occurring in vicinal disulfide bridges. These findings provide direct evidence for the mutual influence of the geometrical parameters that describe the protein structure.

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Year:  2005        PMID: 15755444     DOI: 10.1016/j.jmb.2005.01.065

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  19 in total

1.  Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites.

Authors:  Donald S Berkholz; Camden M Driggers; Maxim V Shapovalov; Roland L Dunbrack; P Andrew Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-23       Impact factor: 11.205

2.  Cis-trans peptide variations in structurally similar proteins.

Authors:  Agnel Praveen Joseph; Narayanaswamy Srinivasan; Alexandre G de Brevern
Journal:  Amino Acids       Date:  2012-01-08       Impact factor: 3.520

3.  omega-Helices in proteins.

Authors:  Purevjav Enkhbayar; Bazartseren Boldgiv; Norio Matsushima
Journal:  Protein J       Date:  2010-05       Impact factor: 2.371

4.  Dihedral-angle information entropy as a gauge of secondary structure propensity.

Authors:  Shi Zhong; Jeremy M Moix; Stephen Quirk; Rigoberto Hernandez
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

5.  Structural dependencies of protein backbone 2JNC' couplings.

Authors:  Nenad Juranić; J J Dannenberg; Gabriel Cornilescu; Pedro Salvador; Elena Atanasova; Hee-Chul Ahn; Slobodan Macura; John L Markley; Franklyn G Prendergast
Journal:  Protein Sci       Date:  2008-02-27       Impact factor: 6.725

6.  Consensus structure of Pf1 filamentous bacteriophage from X-ray fibre diffraction and solid-state NMR.

Authors:  S K Straus; W R P Scott; C D Schwieters; D A Marvin
Journal:  Eur Biophys J       Date:  2010-11-17       Impact factor: 1.733

7.  Integration of Diverse Research Methods to Analyze and Engineer Ca-Binding Proteins: From Prediction to Production.

Authors:  Michael Kirberger; Xue Wang; Kun Zhao; Shen Tang; Guantao Chen; Jenny J Yang
Journal:  Curr Bioinform       Date:  2010-03-01       Impact factor: 3.543

8.  Dependence of the AmII'p proline Raman band on peptide conformation.

Authors:  Zeeshan Ahmed; Nataliya S Myshakina; Sanford A Asher
Journal:  J Phys Chem B       Date:  2009-08-13       Impact factor: 2.991

9.  Synthesis, Redox Properties, and Conformational Analysis of Vicinal Disulfide Ring Mimics.

Authors:  Erik L Ruggles; P Bruce Deker; Robert J Hondal
Journal:  Tetrahedron       Date:  2009-02-14       Impact factor: 2.457

10.  Restricting the ψ Torsion Angle Has Stereoelectronic Consequences on a Scissile Bond: An Electronic Structure Analysis.

Authors:  Eric R Strieter; Trisha L Andrew
Journal:  Biochemistry       Date:  2015-09-08       Impact factor: 3.162

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