Literature DB >> 15752998

Flux an important, but neglected, component of functional genomics.

Alisdair R Fernie1, Peter Geigenberger, Mark Stitt.   

Abstract

Genomics approaches aimed at understanding metabolism currently tend to involve mainly expression profiling, although proteomics and steady-state metabolite profiling are increasingly being carried out as alternative strategies. These approaches provide rich information on the inventory of the cell. It is, however, of growing importance that such approaches are augmented by sophisticated integrative analyses and a higher-level understanding of cellular dynamics to provide insights into mechanisms that underlie biological processes. We argue the need for, and discuss theoretical and practical aspects of, the determination of metabolic flux as a component of functional genomics.

Mesh:

Year:  2005        PMID: 15752998     DOI: 10.1016/j.pbi.2005.01.008

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  32 in total

Review 1.  Comparative physiology of elemental distributions in plants.

Authors:  Simon Conn; Matthew Gilliham
Journal:  Ann Bot       Date:  2010-04-21       Impact factor: 4.357

2.  Basal signaling regulates plant growth and development.

Authors:  Wendy F Boss; Heike Winter Sederoff; Yang Ju Im; Nava Moran; Amy M Grunden; Imara Y Perera
Journal:  Plant Physiol       Date:  2010-10       Impact factor: 8.340

Review 3.  Probing Metabolism in the Intact Retina Using Stable Isotope Tracers.

Authors:  Jianhai Du; Jonathan D Linton; James B Hurley
Journal:  Methods Enzymol       Date:  2015-06-14       Impact factor: 1.600

Review 4.  Fluxomics: mass spectrometry versus quantitative imaging.

Authors:  Wolfgang Wiechert; Oliver Schweissgut; Hitomi Takanaga; Wolf B Frommer
Journal:  Curr Opin Plant Biol       Date:  2007-05-03       Impact factor: 7.834

5.  Genetic and functional investigation of Zn(2)Cys(6) transcription factors RSE2 and RSE3 in Podospora anserina.

Authors:  Elodie Bovier; Carole H Sellem; Adeline Humbert; Annie Sainsard-Chanet
Journal:  Eukaryot Cell       Date:  2013-11-01

Review 6.  Metabolic networks: how to identify key components in the regulation of metabolism and growth.

Authors:  Mark Stitt; Ronan Sulpice; Joost Keurentjes
Journal:  Plant Physiol       Date:  2009-12-11       Impact factor: 8.340

7.  Elements required for an efficient NADP-malic enzyme type C4 photosynthesis.

Authors:  Yu Wang; Stephen P Long; Xin-Guang Zhu
Journal:  Plant Physiol       Date:  2014-02-12       Impact factor: 8.340

8.  Metabolic network fluxes in heterotrophic Arabidopsis cells: stability of the flux distribution under different oxygenation conditions.

Authors:  Thomas C R Williams; Laurent Miguet; Shyam K Masakapalli; Nicholas J Kruger; Lee J Sweetlove; R George Ratcliffe
Journal:  Plant Physiol       Date:  2008-07-30       Impact factor: 8.340

9.  Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism.

Authors:  Eva Grafahrend-Belau; Falk Schreiber; Dirk Koschützki; Björn H Junker
Journal:  Plant Physiol       Date:  2008-11-05       Impact factor: 8.340

10.  The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators.

Authors:  Sergey Malitsky; Eyal Blum; Hadar Less; Ilya Venger; Moshe Elbaz; Shai Morin; Yuval Eshed; Asaph Aharoni
Journal:  Plant Physiol       Date:  2008-10-01       Impact factor: 8.340

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