Literature DB >> 15746288

ArrayCyGHt: a web application for analysis and visualization of array-CGH data.

Su Young Kim1, Suk Woo Nam, Sug Hyung Lee, Won Sang Park, Nam Jin Yoo, Jung Young Lee, Yeun-Jun Chung.   

Abstract

UNLABELLED: ArrayCyGHt is a web-based application tool for analysis and visualization of microarray-comparative genomic hybridization (array-CGH) data. Full process of array-CGH data analysis, from normalization of raw data to the final visualization of copy number gain or loss, can be straightforwardly achieved on this arrayCyGHt system without the use of any further software. ArrayCyGHt, therefore, provides an easy and fast tool for the analysis of copy number aberrations in any kinds of data format. AVAILABILITY: ArrayCyGHt can be accessed at http://genomics.catholic.ac.kr/arrayCGH/

Mesh：

Year:  2005        PMID： 15746288     DOI： 10.1093/bioinformatics/bti357

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  17 in total

Review 1.  Bioinformatics and cancer: an essential alliance.

Authors:  Joaquín Dopazo
Journal:  Clin Transl Oncol       Date:  2006-06       Impact factor: 3.405

2.  Clinical implication of recurrent copy number alterations in hepatocellular carcinoma and putative oncogenes in recurrent gains on 1q.

Authors:  Tae-Min Kim; Seon-Hee Yim; Seung-Hun Shin; Hai-Dong Xu; Yu-Chae Jung; Cheol-Keun Park; Jong-Young Choi; Won-Sang Park; Mi-Seon Kwon; Heike Fiegler; Nigel P Carter; Mun-Gan Rhyu; Yeun-Jun Chung
Journal:  Int J Cancer       Date:  2008-12-15       Impact factor: 7.396

3.  waviCGH: a web application for the analysis and visualization of genomic copy number alterations.

Authors:  Angel Carro; Daniel Rico; Oscar M Rueda; Ramón Díaz-Uriarte; David G Pisano
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

4.  Simultaneous copy number gains of NUPR1 and ERBB2 predicting poor prognosis in early-stage breast cancer.

Authors:  Seung-Hyun Jung; Ahwon Lee; Seon-Hee Yim; Hae-Jin Hu; Chungyoul Choe; Yeun-Jun Chung
Journal:  BMC Cancer       Date:  2012-08-31       Impact factor: 4.430

5.  CNV-WebStore: online CNV analysis, storage and interpretation.

Authors:  Geert Vandeweyer; Edwin Reyniers; Wim Wuyts; Liesbeth Rooms; R Frank Kooy
Journal:  BMC Bioinformatics       Date:  2011-01-05       Impact factor: 3.307

6.  FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context.

Authors:  Malte Mader; Ronald Simon; Sascha Steinbiss; Stefan Kurtz
Journal:  J Clin Bioinforma       Date:  2011-07-28

7.  Genomic alterations identified by array comparative genomic hybridization as prognostic markers in tamoxifen-treated estrogen receptor-positive breast cancer.

Authors:  Wonshik Han; Mi-Ryung Han; Jason Jongho Kang; Ji-Yeon Bae; Ji Hyun Lee; Young Ju Bae; Jeong Eon Lee; Hyuk-Jae Shin; Ki-Tae Hwang; Sung-Eun Hwang; Sung-Won Kim; Dong-Young Noh
Journal:  BMC Cancer       Date:  2006-04-12       Impact factor: 4.430

8.  CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data.

Authors:  Bradley D Anderson; Michael C Gilson; Abigail A Scott; Bryan S Biehl; Jeremy D Glasner; Gireesh Rajashekara; Gary A Splitter; Nicole T Perna
Journal:  BMC Genomics       Date:  2006-04-25       Impact factor: 3.969

9.  CAPweb: a bioinformatics CGH array Analysis Platform.

Authors:  Stéphane Liva; Philippe Hupé; Pierre Neuvial; Isabel Brito; Eric Viara; Philippe La Rosa; Emmanuel Barillot
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

10.  CGI: Java software for mapping and visualizing data from array-based comparative genomic hybridization and expression profiling.

Authors:  Joyce Xiuweu-Xu Gu; Michael Yang Wei; Pulivarthi H Rao; Ching C Lau; Sanjiv Behl; Tsz-Kwong Man
Journal:  Gene Regul Syst Bio       Date:  2007-10-06
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