Literature DB >> 15746282

Mega2: data-handling for facilitating genetic linkage and association analyses.

Nandita Mukhopadhyay1, Lee Almasy, Mark Schroeder, William P Mulvihill, Daniel E Weeks.   

Abstract

UNLABELLED: Mega2, the manipulation environment for genetic analysis, transparently allows users to process genetic data for family-based or case/control studies accurately and efficiently. In addition to data validation checks, Mega2 provides analysis setup capabilities for a broad choice of commonly used genetic analysis programs, including SimWalk2, ASPEX, GeneHunter, SLINK, SIMULATE, S.A.G.E., SOLAR, Vitesse, Allegro, PREST, PAP, Loki, Merlin and MENDEL. AVAILABILITY: http://watson.hgen.pitt.edu/register/

Entities:  

Mesh：

Year:  2005        PMID： 15746282     DOI： 10.1093/bioinformatics/bti364

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  76 in total

1.  Mutations in STX1B, encoding a presynaptic protein, cause fever-associated epilepsy syndromes.

Authors:  Julian Schubert; Aleksandra Siekierska; Mélanie Langlois; Patrick May; Clément Huneau; Felicitas Becker; Hiltrud Muhle; Arvid Suls; Johannes R Lemke; Carolien G F de Kovel; Holger Thiele; Kathryn Konrad; Amit Kawalia; Mohammad R Toliat; Thomas Sander; Franz Rüschendorf; Almuth Caliebe; Inga Nagel; Bernard Kohl; Angela Kecskés; Maxime Jacmin; Katia Hardies; Sarah Weckhuysen; Erik Riesch; Thomas Dorn; Eva H Brilstra; Stephanie Baulac; Rikke S Møller; Helle Hjalgrim; Bobby P C Koeleman; Karin Jurkat-Rott; Frank Lehman-Horn; Jared C Roach; Gustavo Glusman; Leroy Hood; David J Galas; Benoit Martin; Peter A M de Witte; Saskia Biskup; Peter De Jonghe; Ingo Helbig; Rudi Balling; Peter Nürnberg; Alexander D Crawford; Camila V Esguerra; Yvonne G Weber; Holger Lerche
Journal:  Nat Genet       Date:  2014-11-02       Impact factor: 38.330

2.  PedMerge: merging pedigrees to facilitate family-based genetic statistical analyses.

Authors:  Rosemarie Plaetke; Federico Balbi
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

3.  A genome wide linkage scan for dizygotic twinning in 525 families of mothers of dizygotic twins.

Authors:  Jodie N Painter; Gonneke Willemsen; Dale Nyholt; Chantal Hoekstra; David L Duffy; Anjali K Henders; Leanne Wallace; Sue Healey; Lisa A Cannon-Albright; Mark Skolnick; Nicholas G Martin; Dorret I Boomsma; Grant W Montgomery
Journal:  Hum Reprod       Date:  2010-04-08       Impact factor: 6.918

4.  Tremor-ataxia with central hypomyelination (TACH) leukodystrophy maps to chromosome 10q22.3-10q23.31.

Authors:  Geneviève Bernard; Isabelle Thiffault; Martine Tetreault; Maria Lisa Putorti; Isabelle Bouchard; Michel Sylvain; Serge Melançon; Rachel Laframboise; Pierre Langevin; Jean-Pierre Bouchard; Michel Vanasse; Adeline Vanderver; Guillaume Sébire; Bernard Brais
Journal:  Neurogenetics       Date:  2010-07-17       Impact factor: 2.660

5.  PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers.

Authors:  Alejandro Q Nato; Nicola H Chapman; Harkirat K Sohi; Hiep D Nguyen; Zoran Brkanac; Ellen M Wijsman
Journal:  Bioinformatics       Date:  2015-07-30       Impact factor: 6.937

6.  Susceptibility genes for age-related maculopathy on chromosome 10q26.

Authors:  Johanna Jakobsdottir; Yvette P Conley; Daniel E Weeks; Tammy S Mah; Robert E Ferrell; Michael B Gorin
Journal:  Am J Hum Genet       Date:  2005-07-26       Impact factor: 11.025

7.  Variants in TTC25 affect autistic trait in patients with autism spectrum disorder and general population.

Authors:  Dina Vojinovic; Nathalie Brison; Shahzad Ahmad; Ilse Noens; Irene Pappa; Lennart C Karssen; Henning Tiemeier; Cornelia M van Duijn; Hilde Peeters; Najaf Amin
Journal:  Eur J Hum Genet       Date:  2017-05-17       Impact factor: 4.246

8.  Susceptibility loci for adiposity phenotypes on 8p, 9p, and 16q in American Samoa and Samoa.

Authors:  Karolina Aberg; Feng Dai; Guangyun Sun; Ember D Keighley; Subba R Indugula; Sarah T Roberts; Qi Zhang; Diane Smelser; Satupaitea Viali; John Tuitele; Li Jin; Ranjan Deka; Daniel E Weeks; Stephen T McGarvey
Journal:  Obesity (Silver Spring)       Date:  2008-12-18       Impact factor: 5.002

9.  Analysis of maternal-offspring HLA compatibility, parent-of-origin and non-inherited maternal effects for the classical HLA loci in type 1 diabetes.

Authors:  P G Bronson; P P Ramsay; G Thomson; L F Barcellos
Journal:  Diabetes Obes Metab       Date:  2009-02       Impact factor: 6.577

10.  Genotype-phenotype relationship of F7 R353Q polymorphism and plasma factor VII coagulant activity in Asian Indian families predisposed to coronary artery disease.

Authors:  Jayashree Shanker; Ganapathy Perumal; Arindam Maitra; Veena S Rao; B K Natesha; Shibu John; Sridhar Hebbagodi; Vijay V Kakkar
Journal:  J Genet       Date:  2009-12       Impact factor: 1.166
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