Literature DB >> 15734643

Creating small-molecule-dependent switches to modulate biological functions.

Allen R Buskirk1, David R Liu.   

Abstract

Biological small-molecule-dependent switches sense external chemical signals and transduce them into appropriate internal signals and cellular responses. Artificial molecular switches that control the function of any protein of interest using a small molecule are powerful tools for studying biology because they enable cellular responses to be controlled by inputs chosen by researcher. Furthermore, these switches can combine the generality of genetic regulation with the reversibility and temporal control afforded by small molecules. Three approaches to creating molecular switches include altering a natural switch to recognize new exogenous ligands, engineering novel allosteric responses to ligand binding, or enforcing protein localization with chemical dimerizers. Here, we discuss the development of small-molecule-dependent switches that control in a general fashion transcriptional activation, translational initiation, and protein activity posttranslationally.

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Year:  2005        PMID: 15734643     DOI: 10.1016/j.chembiol.2004.11.012

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  29 in total

Review 1.  Allosteric regulation of protease activity by small molecules.

Authors:  Aimee Shen
Journal:  Mol Biosyst       Date:  2010-06-10

2.  Ligand-regulated peptide aptamers that inhibit the 5'-AMP-activated protein kinase.

Authors:  Russell A Miller; Brock F Binkowski; Peter J Belshaw
Journal:  J Mol Biol       Date:  2006-07-26       Impact factor: 5.469

3.  HIV protease-activated molecular switches based on beta-glucuronidase and alkaline phosphatase.

Authors:  Taryn L O'Loughlin; Ichiro Matsumura
Journal:  Comb Chem High Throughput Screen       Date:  2006-05       Impact factor: 1.339

4.  Characterization of the 4D5Flu single-chain antibody with a stimulus-responsive elastin-like peptide linker: a potential reporter of peptide linker conformation.

Authors:  Mark A Blenner; Scott Banta
Journal:  Protein Sci       Date:  2008-01-24       Impact factor: 6.725

Review 5.  Functional nucleic acid sensors.

Authors:  Juewen Liu; Zehui Cao; Yi Lu
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

6.  Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensors.

Authors:  Alexis Vallée-Bélisle; Francesco Ricci; Kevin W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-05       Impact factor: 11.205

7.  A combinatorial histidine scanning library approach to engineer highly pH-dependent protein switches.

Authors:  Megan L Murtaugh; Sean W Fanning; Tressa M Sharma; Alexandra M Terry; James R Horn
Journal:  Protein Sci       Date:  2011-08-03       Impact factor: 6.725

8.  Biomolecular engineering of intracellular switches in eukaryotes.

Authors:  M K Pastuszka; J A Mackay
Journal:  J Drug Deliv Sci Technol       Date:  2010-05       Impact factor: 3.981

Review 9.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

10.  Directed evolution of protein switches and their application to the creation of ligand-binding proteins.

Authors:  Gurkan Guntas; Thomas J Mansell; Jin Ryoun Kim; Marc Ostermeier
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

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