Literature DB >> 15734551

Engineering regulatory RNAs.

Eric A Davidson1, Andrew D Ellington.   

Abstract

RNA has long been a favoured medium for in vitro evolution and engineering. Functional RNAs produced in vitro can bind small molecules (aptamers), possess catalytic activity (ribozymes) or do both (aptazymes). A plethora of recent work has shown similar strategies used naturally for gene regulation in bacteria. Interest in these natural systems has inspired an effort to engineer and evolve this activity in vivo. A recent paper by Isaacs et al. describes the engineering and in vivo activity of a small RNA that removes translation inhibition by binding the 5' untranslated region of its target mRNA and making the ribosome-binding site accessible.

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Year:  2005        PMID: 15734551     DOI: 10.1016/j.tibtech.2005.01.006

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  10 in total

1.  Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

Authors:  Shungo Kobori; Norikazu Ichihashi; Yasuaki Kazuta; Tomoaki Matsuura; Tetsuya Yomo
Journal:  RNA       Date:  2012-06-25       Impact factor: 4.942

Review 2.  Biology by design: reduction and synthesis of cellular components and behaviour.

Authors:  Philippe Marguet; Frederick Balagadde; Cheemeng Tan; Lingchong You
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

3.  Control of mammalian translation by mRNA structure near caps.

Authors:  Jeremy R Babendure; Jennie L Babendure; Jian-Hua Ding; Roger Y Tsien
Journal:  RNA       Date:  2006-03-15       Impact factor: 4.942

4.  Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction.

Authors:  Chung-Il An; Vu B Trinh; Yohei Yokobayashi
Journal:  RNA       Date:  2006-04-10       Impact factor: 4.942

5.  Logic integration of mRNA signals by an RNAi-based molecular computer.

Authors:  Zhen Xie; Siyuan John Liu; Leonidas Bleris; Yaakov Benenson
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

6.  In vitro assembly of cubic RNA-based scaffolds designed in silico.

Authors:  Kirill A Afonin; Eckart Bindewald; Alan J Yaghoubian; Neil Voss; Erica Jacovetty; Bruce A Shapiro; Luc Jaeger
Journal:  Nat Nanotechnol       Date:  2010-08-29       Impact factor: 39.213

7.  Bioinformatic analysis of the contribution of primer sequences to aptamer structures.

Authors:  Matthew C Cowperthwaite; Andrew D Ellington
Journal:  J Mol Evol       Date:  2008-07-02       Impact factor: 2.395

Review 8.  Engineering ligand-responsive gene-control elements: lessons learned from natural riboswitches.

Authors:  K H Link; R R Breaker
Journal:  Gene Ther       Date:  2009-07-09       Impact factor: 5.250

9.  Small RNA modules confer different stabilities and interact differently with multiple targets.

Authors:  José Marques Andrade; Vânia Pobre; Cecília Maria Arraiano
Journal:  PLoS One       Date:  2013-01-22       Impact factor: 3.240

10.  Controlling RNA self-assembly to form filaments.

Authors:  Lorena Nasalean; Stéphanie Baudrey; Neocles B Leontis; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2006-03-06       Impact factor: 16.971

  10 in total

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