Literature DB >> 15731212

DATF: a database of Arabidopsis transcription factors.

Anyuan Guo1, Kun He, Di Liu, Shunong Bai, Xiaocheng Gu, Liping Wei, Jingchu Luo.   

Abstract

UNLABELLED: We have probably developed the most comprehensive database of Arabidopsis transcription factors (DATF). The DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals. AVAILABILITY: DATF is freely available at http://datf.cbi.pku.edu.cn

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Year:  2005        PMID： 15731212     DOI： 10.1093/bioinformatics/bti334

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  149 in total

1.  Analysis of Arabidopsis transcription factor families revealed extensive capacity for cell-to-cell movement as well as discrete trafficking patterns.

Authors:  Yeonggil Rim; Lijun Huang; Hyosub Chu; Xiao Han; Won Kyong Cho; Che Ok Jeon; Hye Jin Kim; Jong-Chan Hong; William J Lucas; Jae-Yean Kim
Journal:  Mol Cells       Date:  2011-11-09       Impact factor: 5.034

2.  Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis.

Authors:  David Reňák; Nikoleta Dupl'áková; David Honys
Journal:  Sex Plant Reprod       Date:  2011-11-20

3.  Template-based structure prediction and classification of transcription factors in Arabidopsis thaliana.

Authors:  Tao Lu; Yuedong Yang; Bo Yao; Song Liu; Yaoqi Zhou; Chi Zhang
Journal:  Protein Sci       Date:  2012-05-01       Impact factor: 6.725

4.  Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique.

Authors:  Yukinori Yabuta; Teruyuki Morishita; Yusuke Kojima; Takanori Maruta; Ayako Nishizawa-Yokoi; Shigeru Shigeoka
Journal:  Plant Signal Behav       Date:  2010-06-01

5.  Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis.

Authors:  Sowmya Krishnaswamy; Shiv Verma; Muhammad H Rahman; Nat N V Kav
Journal:  Plant Mol Biol       Date:  2010-11-11       Impact factor: 4.076

6.  Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information.

Authors:  T Elizabeth Workman; Marcelo Fiszman; John F Hurdle; Thomas C Rindflesch
Journal:  J Med Libr Assoc       Date:  2010-10

7.  Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato.

Authors:  Manoj K Sharma; Rahul Kumar; Amolkumar U Solanke; Rita Sharma; Akhilesh K Tyagi; Arun K Sharma
Journal:  Mol Genet Genomics       Date:  2010-10-05       Impact factor: 3.291

8.  Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis.

Authors:  Wenli Zhang; Tao Zhang; Yufeng Wu; Jiming Jiang
Journal:  Plant Cell       Date:  2012-07-05       Impact factor: 11.277

9.  Genome-wide analysis of AP2/ERF family genes from Lotus corniculatus shows LcERF054 enhances salt tolerance.

Authors:  Zhan-Min Sun; Mei-Liang Zhou; Xing-Guo Xiao; Yi-Xiong Tang; Yan-Min Wu
Journal:  Funct Integr Genomics       Date:  2014-04-29       Impact factor: 3.410

10.  Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation.

Authors:  Yuling Jiao; José Luis Riechmann; Elliot M Meyerowitz
Journal:  Plant Cell       Date:  2008-10-24       Impact factor: 11.277
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