Literature DB >> 15728738

Adaptive evolution of the insulin gene in caviomorph rodents.

Juan C Opazo1, R Eduardo Palma, Francisco Melo, Enrique P Lessa.   

Abstract

Insulin is a conservative molecule among mammals, maintaining both its structure and function. Rodents that belong to the Suborder Hystricognathi represent an exception, having a very divergent molecule with unusual physiological properties. In this work, we analyzed the evolutionary pattern of the insulin gene in caviomorph rodents (South American hystricomorph rodents). We found that these rodents have higher rates of nonsynonymous:synonymous substitutions (d(N)/d(S)) than nonhystricomorph rodents and that values are heterogeneous inside the group. We estimated codons under positive selection, specifically the second binding site (A13 and B17) and others related with hexamerization (B18, B20, and B22). In the monomer structure, all selected sites formed a single patch around the second binding site. In the hexamer structure, these amino acids were grouped into three major patches. In this structure, contacts between B chains involved all selected sites (except B18), and between faces in the center of the molecule, all contacts were among selected sites. While there is no clear hypothesis regarding the cause of this drastic change, experimental evidence does show that this group of rodents has some peculiarities in growth function, and, whether coincidental or not, these changes appeared together with important changes in life-history traits.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15728738     DOI: 10.1093/molbev/msi117

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  8 in total

1.  Adaptive diversity of incisor enamel microstructure in South American burrowing rodents (family Ctenomyidae, Caviomorpha).

Authors:  Emma C Vieytes; Cecilia C Morgan; Diego H Verzi
Journal:  J Anat       Date:  2007-06-20       Impact factor: 2.610

2.  Accelerated evolutionary rate of the myoglobin gene in long-diving whales.

Authors:  Mariana F Nery; José Ignacio Arroyo; Juan C Opazo
Journal:  J Mol Evol       Date:  2013-07-16       Impact factor: 2.395

3.  Burrow limitations and group living in the communally rearing rodent, Octodon degus.

Authors:  Luis A Ebensperger; Adrian S Chesh; Rodrigo A Castro; Liliana Ortiz Tolhuysen; Verónica Quirici; Joseph Robert Burger; Raúl Sobrero; Loren D Hayes
Journal:  J Mammal       Date:  2011       Impact factor: 2.416

4.  Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes.

Authors:  Xiaodong Fang; Inge Seim; Zhiyong Huang; Maxim V Gerashchenko; Zhiqiang Xiong; Anton A Turanov; Yabing Zhu; Alexei V Lobanov; Dingding Fan; Sun Hee Yim; Xiaoming Yao; Siming Ma; Lan Yang; Sang-Goo Lee; Eun Bae Kim; Roderick T Bronson; Radim Šumbera; Rochelle Buffenstein; Xin Zhou; Anders Krogh; Thomas J Park; Guojie Zhang; Jun Wang; Vadim N Gladyshev
Journal:  Cell Rep       Date:  2014-08-28       Impact factor: 9.423

5.  How to Make a Rodent Giant: Genomic Basis and Tradeoffs of Gigantism in the Capybara, the World's Largest Rodent.

Authors:  Santiago Herrera-Álvarez; Elinor Karlsson; Oliver A Ryder; Kerstin Lindblad-Toh; Andrew J Crawford
Journal:  Mol Biol Evol       Date:  2021-05-04       Impact factor: 16.240

6.  Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.

Authors:  Shani Blanga-Kanfi; Hector Miranda; Osnat Penn; Tal Pupko; Ronald W DeBry; Dorothée Huchon
Journal:  BMC Evol Biol       Date:  2009-04-02       Impact factor: 3.260

Review 7.  Unraveling the message: insights into comparative genomics of the naked mole-rat.

Authors:  Kaitlyn N Lewis; Ilya Soifer; Eugene Melamud; Margaret Roy; R Scott McIsaac; Matthew Hibbs; Rochelle Buffenstein
Journal:  Mamm Genome       Date:  2016-06-30       Impact factor: 2.957

8.  A linked-read approach to museomics: Higher quality de novo genome assemblies from degraded tissues.

Authors:  Jocelyn P Colella; Anna Tigano; Matthew D MacManes
Journal:  Mol Ecol Resour       Date:  2020-05-11       Impact factor: 7.090

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.