Literature DB >> 15713840

Genome-wide RNAi screen reveals a specific sensitivity of IRES-containing RNA viruses to host translation inhibition.

Sara Cherry1, Tammy Doukas, Susan Armknecht, Sean Whelan, Hui Wang, Peter Sarnow, Norbert Perrimon.   

Abstract

The widespread class of RNA viruses that utilize internal ribosome entry sites (IRESs) for translation include poliovirus and Hepatitis C virus. To identify host factors required for IRES-dependent translation and viral replication, we performed a genome-wide RNAi screen in Drosophila cells infected with Drosophila C virus (DCV). We identified 66 ribosomal proteins that, when depleted, specifically inhibit DCV growth, but not a non-IRES-containing RNA virus. Moreover, treatment of flies with a translation inhibitor is protective in vivo. Finally, this increased sensitivity to ribosome levels also holds true for poliovirus infection of human cells, demonstrating the generality of these findings.

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Year:  2005        PMID: 15713840      PMCID: PMC548945          DOI: 10.1101/gad.1267905

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  23 in total

1.  Proliferation, but not growth, blocked by conditional deletion of 40S ribosomal protein S6.

Authors:  S Volarevic; M J Stewart; B Ledermann; F Zilberman; L Terracciano; E Montini; M Grompe; S C Kozma; G Thomas
Journal:  Science       Date:  2000-06-16       Impact factor: 47.728

Review 2.  Internal ribosome entry sites in eukaryotic mRNA molecules.

Authors:  C U Hellen; P Sarnow
Journal:  Genes Dev       Date:  2001-07-01       Impact factor: 11.361

3.  Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray.

Authors:  G Johannes; M S Carter; M B Eisen; P O Brown; P Sarnow
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

4.  The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit.

Authors:  D E Brodersen; W M Clemons; A P Carter; R J Morgan-Warren; B T Wimberly; V Ramakrishnan
Journal:  Cell       Date:  2000-12-22       Impact factor: 41.582

5.  Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways.

Authors:  J C Clemens; C A Worby; N Simonson-Leff; M Muda; T Maehama; B A Hemmings; J E Dixon
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 6.  Molecular mechanisms of translation initiation in eukaryotes.

Authors:  T V Pestova; V G Kolupaeva; I B Lomakin; E V Pilipenko; I N Shatsky; V I Agol; C U Hellen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

Review 7.  Antiviral actions of interferons.

Authors:  C E Samuel
Journal:  Clin Microbiol Rev       Date:  2001-10       Impact factor: 26.132

8.  Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites.

Authors:  J E Wilson; M J Powell; S E Hoover; P Sarnow
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

9.  Functional profiling of the Saccharomyces cerevisiae genome.

Authors:  Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

Review 10.  Hijacking the translation apparatus by RNA viruses.

Authors:  Martin Bushell; Peter Sarnow
Journal:  J Cell Biol       Date:  2002-08-05       Impact factor: 10.539

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  125 in total

1.  In vivo delivery of cytoplasmic RNA virus-derived miRNAs.

Authors:  Ryan A Langlois; Jillian S Shapiro; Alissa M Pham; Benjamin R tenOever
Journal:  Mol Ther       Date:  2011-11-15       Impact factor: 11.454

2.  Identification of novel host factors via conserved domain search: Cns1 cochaperone is a novel restriction factor of tombusvirus replication in yeast.

Authors:  Jing-Yi Lin; Peter D Nagy
Journal:  J Virol       Date:  2013-09-11       Impact factor: 5.103

3.  RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses.

Authors:  Debasis Panda; Anshuman Das; Phat X Dinh; Sakthivel Subramaniam; Debasis Nayak; Nicholas J Barrows; James L Pearson; Jesse Thompson; David L Kelly; Istvan Ladunga; Asit K Pattnaik
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-07       Impact factor: 11.205

Review 4.  Applications of high-throughput RNA interference screens to problems in cell and developmental biology.

Authors:  Norbert Perrimon; Bernard Mathey-Prevot
Journal:  Genetics       Date:  2007-01       Impact factor: 4.562

Review 5.  Searching for IRES.

Authors:  Stephen D Baird; Marcel Turcotte; Robert G Korneluk; Martin Holcik
Journal:  RNA       Date:  2006-09-06       Impact factor: 4.942

6.  ADP ribosylation factor 1 plays an essential role in the replication of a plant RNA virus.

Authors:  Kiwamu Hyodo; Akira Mine; Takako Taniguchi; Masanori Kaido; Kazuyuki Mise; Hisaaki Taniguchi; Tetsuro Okuno
Journal:  J Virol       Date:  2012-10-24       Impact factor: 5.103

7.  Translation initiation factors are not required for Dicistroviridae IRES function in vivo.

Authors:  Nilsa Deniz; Erik M Lenarcic; Dori M Landry; Sunnie R Thompson
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

8.  Inhibition of sterol biosynthesis reduces tombusvirus replication in yeast and plants.

Authors:  Monika Sharma; Zsuzsanna Sasvari; Peter D Nagy
Journal:  J Virol       Date:  2009-12-16       Impact factor: 5.103

9.  Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication.

Authors:  Alexander Karlas; Nikolaus Machuy; Yujin Shin; Klaus-Peter Pleissner; Anita Artarini; Dagmar Heuer; Daniel Becker; Hany Khalil; Lesley A Ogilvie; Simone Hess; André P Mäurer; Elke Müller; Thorsten Wolff; Thomas Rudel; Thomas F Meyer
Journal:  Nature       Date:  2010-01-17       Impact factor: 49.962

10.  Proteomic and mechanistic dissection of the poxvirus-customized ribosome.

Authors:  Stephen DiGiuseppe; Madeline G Rollins; Helen Astar; Natalia Khalatyan; Jeffrey N Savas; Derek Walsh
Journal:  J Cell Sci       Date:  2020-07-09       Impact factor: 5.285

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