Literature DB >> 15702330

Origin and evolution of the Ig-like domains present in mammalian leukocyte receptors: insights from chicken, frog, and fish homologues.

Nikolas Nikolaidis1, Jan Klein, Masatoshi Nei.   

Abstract

In mammals many natural killer (NK) cell receptors, encoded by the leukocyte receptor complex (LRC), regulate the cytotoxic activity of NK cells and provide protection against virus-infected and tumor cells. To investigate the origin of the Ig-like domains encoded by the LRC genes, a subset of C2-type Ig-like domain sequences was compiled from mammals, birds, amphibians, and fish. Phylogenetic analysis of these sequences generated seven monophyletic groups in mammals (MI, MII, and FcI, FcIIa, FcIIb, FcIII, FcIV), two in chicken (CI, CII), four in frog (FI-FIV), and five in zebrafish (ZI-ZV). The analysis of the major groups supported the following order of divergence: ZI [or a common ancestor of ZI and F (a cluster composed of the FcIII and FIII groups)], F, CII (or a common ancestor of CII and MII), MII, and MI-CI. The relationships of the remaining groups were unclear, since the phylogenetic positions of these groups were not supported by high bootstrap values. Two main conclusions can be drawn from this analysis. First, the two groups of mammalian LRC sequences must diverged before the separation of the avian and mammalian lineages. Second, the mammalian LRC sequences are most closely related to the Fc receptor sequences and these two groups diverged before the separation of birds and mammals.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15702330      PMCID: PMC1472664          DOI: 10.1007/s00251-004-0764-0

Source DB:  PubMed          Journal:  Immunogenetics        ISSN: 0093-7711            Impact factor:   2.846


  19 in total

1.  Evolution of the human killer cell inhibitory receptor family.

Authors:  Austin L Hughes
Journal:  Mol Phylogenet Evol       Date:  2002-11       Impact factor: 4.286

Review 2.  Natural killer cell receptor signaling.

Authors:  Lewis L Lanier
Journal:  Curr Opin Immunol       Date:  2003-06       Impact factor: 7.486

3.  SMART 4.0: towards genomic data integration.

Authors:  Ivica Letunic; Richard R Copley; Steffen Schmidt; Francesca D Ciccarelli; Tobias Doerks; Jörg Schultz; Chris P Ponting; Peer Bork
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 4.  Genesis of the ILT/LIR/MIR clusters within the human leukocyte receptor complex.

Authors:  A Volz; H Wende; K Laun; A Ziegler
Journal:  Immunol Rev       Date:  2001-06       Impact factor: 12.988

Review 5.  The genomic context of natural killer receptor extended gene families.

Authors:  J Trowsdale; R Barten; A Haude; C A Stewart; S Beck; M J Wilson
Journal:  Immunol Rev       Date:  2001-06       Impact factor: 12.988

6.  IRTAs: a new family of immunoglobulinlike receptors differentially expressed in B cells.

Authors:  Ira Miller; Georgia Hatzivassiliou; Giorgio Cattoretti; Cathy Mendelsohn; Riccardo Dalla-Favera
Journal:  Blood       Date:  2002-04-15       Impact factor: 22.113

Review 7.  Leukocyte Ig-like receptor complex (LRC) in mice and men.

Authors:  Annalise M Martin; Jerzy K Kulski; Campbell Witt; Pierre Pontarotti; Frank T Christiansen
Journal:  Trends Immunol       Date:  2002-02       Impact factor: 16.687

8.  Cutting edge: molecular cloning of a killer cell Ig-like receptor in the mouse and rat.

Authors:  Sigurd E Hoelsbrekken; Øyvind Nylenna; Per C Saether; Imer O Slettedal; James C Ryan; Sigbjørn Fossum; Erik Dissen
Journal:  J Immunol       Date:  2003-03-01       Impact factor: 5.422

9.  Identification of the rat IgA Fc receptor encoded in the leukocyte receptor complex.

Authors:  Takako Maruoka; Taeko Nagata; Masanori Kasahara
Journal:  Immunogenetics       Date:  2003-11-26       Impact factor: 2.846

10.  The Pfam protein families database.

Authors:  Alex Bateman; Lachlan Coin; Richard Durbin; Robert D Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L L Sonnhammer; David J Studholme; Corin Yeats; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

View more
  21 in total

1.  Origin and evolution of the chicken leukocyte receptor complex.

Authors:  Nikolas Nikolaidis; Izabela Makalowska; Dimitra Chalkia; Wojciech Makalowski; Jan Klein; Masatoshi Nei
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

Review 2.  Concerted and birth-and-death evolution of multigene families.

Authors:  Masatoshi Nei; Alejandro P Rooney
Journal:  Annu Rev Genet       Date:  2005       Impact factor: 16.830

3.  Occlusive thrombi arise in mammals but not birds in response to arterial injury: evolutionary insight into human cardiovascular disease.

Authors:  Alec A Schmaier; Timothy J Stalker; Jeffrey J Runge; Dooyoung Lee; Chandrasekaran Nagaswami; Patricia Mericko; Mei Chen; Simon Cliché; Claude Gariépy; Lawrence F Brass; Daniel A Hammer; John W Weisel; Karen Rosenthal; Mark L Kahn
Journal:  Blood       Date:  2011-08-03       Impact factor: 22.113

4.  Identification of natural killer cell receptor clusters in the platypus genome reveals an expansion of C-type lectin genes.

Authors:  Emily S W Wong; Claire E Sanderson; Janine E Deakin; Camilla M Whittington; Anthony T Papenfuss; Katherine Belov
Journal:  Immunogenetics       Date:  2009-07-14       Impact factor: 2.846

5.  Two class I genes of the chicken MHC have different functions: BF1 is recognized by NK cells while BF2 is recognized by CTLs.

Authors:  Taejoong Kim; Henry D Hunt; Mark S Parcells; Vicky van Santen; Sandra J Ewald
Journal:  Immunogenetics       Date:  2018-06-09       Impact factor: 2.846

6.  Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system.

Authors:  Katherine Belov; Claire E Sanderson; Janine E Deakin; Emily S W Wong; Daniel Assange; Kaighin A McColl; Alex Gout; Bernard de Bono; Alexander D Barrow; Terence P Speed; John Trowsdale; Anthony T Papenfuss
Journal:  Genome Res       Date:  2007-05-10       Impact factor: 9.043

7.  The expanded cattle KIR genes are orthologous to the conserved single-copy KIR3DX1 gene of primates.

Authors:  Lisbeth A Guethlein; Laurent Abi-Rached; John A Hammond; Peter Parham
Journal:  Immunogenetics       Date:  2007-04-21       Impact factor: 2.846

8.  The amphibians Xenopus laevis and Silurana tropicalis possess a family of activating KIR-related Immunoglobulin-like receptors.

Authors:  Sergey V Guselnikov; Evdokiya S Reshetnikova; Alexander M Najakshin; Ludmila V Mechetina; Jacques Robert; Alexander V Taranin
Journal:  Dev Comp Immunol       Date:  2009-11-17       Impact factor: 3.636

9.  A novel soluble immune-type receptor (SITR) in teleost fish: carp SITR is involved in the nitric oxide-mediated response to a protozoan parasite.

Authors:  Carla M S Ribeiro; Steve Bird; Geert Raes; Gholamreza H Ghassabeh; Virgil E J C Schijns; Maria J S L Pontes; Huub F J Savelkoul; Geert F Wiegertjes
Journal:  PLoS One       Date:  2011-01-31       Impact factor: 3.240

10.  Widespread divergence of the CEACAM/PSG genes in vertebrates and humans suggests sensitivity to selection.

Authors:  Chia Lin Chang; Jenia Semyonov; Po Jen Cheng; Shang Yu Huang; Jae Il Park; Huai-Jen Tsai; Cheng-Yung Lin; Frank Grützner; Yung Kuei Soong; James J Cai; Sheau Yu Teddy Hsu
Journal:  PLoS One       Date:  2013-04-16       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.