Literature DB >> 15692738

TEDOR with adiabatic inversion pulses: Resonance assignments of 13C/15N labelled RNAs.

Kerstin Riedel1, Jörg Leppert, Oliver Ohlenschläger, Matthias Görlach, Ramadurai Ramachandran.   

Abstract

We have examined via numerical simulations the performance characteristics of different 15N RF pulse schemes employed in the transferred echo double resonance (TEDOR) experimental protocol for generating 13C-15N dipolar chemical shift correlation spectra of isotopically labelled biological systems at moderate MAS frequencies (omega(r) approximately 10 kHz). With an 15N field strength of approximately 30-35 kHz that is typically available in 5 mm triple resonance MAS NMR probes, it is shown that a robust TEDOR sequence with significant tolerance to experimental imperfections sa as H1 inhomogeneity and resonance offsets can be effectively implemented using adiabatic heteronuclear dipolar recoupling pulse schemes. TEDOR-based 15N-13C and 15N-13C-13C chemical shift correlation experiments were carried out for obtaining 13C and 15N resonance assignments of an RNA composed of 97 (CUG) repeats which has been implicated in the neuromuscular disease myotonic dystrophy.

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Year:  2005        PMID: 15692738     DOI: 10.1007/s10858-004-6066-x

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  Compensating for pulse imperfections in REDOR.

Authors:  Thomas K Weldeghiorghis; Jacob Schaefer
Journal:  J Magn Reson       Date:  2003-12       Impact factor: 2.229

2.  Chemical shift correlation via RFDR: elimination of resonance offset effects.

Authors:  Bert Heise; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

3.  REDOR: an assessment of the efficacy of dipolar recoupling with adiabatic inversion pulses.

Authors:  Jörg Leppert; Bert Heise; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

4.  Adiabatic TOBSY in rotating solids.

Authors:  Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

Review 5.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

6.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

7.  Dependence of 13C NMR chemical shifts on conformations of rna nucleosides and nucleotides.

Authors:  M Ebrahimi; P Rossi; C Rogers; G S Harbison
Journal:  J Magn Reson       Date:  2001-05       Impact factor: 2.229

8.  Identification of NH...N hydrogen bonds by magic angle spinning solid state NMR in a double-stranded RNA associated with myotonic dystrophy.

Authors:  Jörg Leppert; Carl R Urbinati; Sabine Häfner; Oliver Ohlenschläger; Maurice S Swanson; Matthias Görlach; Ramadurai Ramachandran
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

9.  Fast broadband inversion by adiabatic pulses.

Authors:  T L Hwang; P C van Zijl; M Garwood
Journal:  J Magn Reson       Date:  1998-07       Impact factor: 2.229

Review 10.  Myotonic dystrophy: RNA pathogenesis comes into focus.

Authors:  Laura P W Ranum; John W Day
Journal:  Am J Hum Genet       Date:  2004-04-02       Impact factor: 11.025

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  12 in total

1.  Characterisation of hydrogen bonding networks in RNAs via magic angle spinning solid state NMR spectroscopy.

Authors:  Kerstin Riedel; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

2.  Solid state NMR at high magic angle spinning frequencies: dipolar chemical shift correlation with adiabatic inversion pulse based RF pulse schemes.

Authors:  Christian Herbst; Kerstin Riedel; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2006-07-25       Impact factor: 2.835

3.  Tailoring broadband inversion pulses for MAS solid state NMR.

Authors:  Kerstin Riedel; Christian Herbst; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2006-07-29       Impact factor: 2.835

4.  MAS solid state NMR of RNAs with multiple receivers.

Authors:  Christian Herbst; Kerstin Riedel; Yvonne Ihle; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2008-05-31       Impact factor: 2.835

5.  Chemical shift correlation at high MAS frequencies employing low-power symmetry-based mixing schemes.

Authors:  Christian Herbst; Jirada Herbst; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2011-06-11       Impact factor: 2.835

6.  Nucleotide-type chemical shift assignment of the encapsulated 40 kbp dsDNA in intact bacteriophage T7 by MAS solid-state NMR.

Authors:  Gili Abramov; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2014-05-30       Impact factor: 2.835

Review 7.  Isotope labeling for studying RNA by solid-state NMR spectroscopy.

Authors:  Alexander Marchanka; Christoph Kreutz; Teresa Carlomagno
Journal:  J Biomol NMR       Date:  2018-04-12       Impact factor: 2.835

8.  Magic-angle-spinning NMR of the drug resistant S31N M2 proton transporter from influenza A.

Authors:  Loren B Andreas; Matthew T Eddy; James J Chou; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2012-04-23       Impact factor: 15.419

9.  Broadband homonuclear chemical shift correlation at high MAS frequencies: a study of tanh/tan adiabatic RF pulse schemes without 1H decoupling during mixing.

Authors:  Kerstin Riedel; Christian Herbst; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2007-02-08       Impact factor: 2.835

10.  Efficient resonance assignment of proteins in MAS NMR by simultaneous intra- and inter-residue 3D correlation spectroscopy.

Authors:  Eugenio Daviso; Matthew T Eddy; Loren B Andreas; Robert G Griffin; Judith Herzfeld
Journal:  J Biomol NMR       Date:  2013-01-19       Impact factor: 2.835

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