Literature DB >> 15689940

The dynamic organization of gene-regulatory machinery in nuclear microenvironments.

Sayyed K Zaidi1, Daniel W Young, Je-Yong Choi, Jitesh Pratap, Amjad Javed, Martin Montecino, Janet L Stein, Andre J van Wijnen, Jane B Lian, Gary S Stein.   

Abstract

Nuclear components are functionally linked with the dynamic temporal and spatial compartmentalization, sorting and integration of regulatory information to facilitate its selective use. For example, the subnuclear targeting of transcription factors to punctate sites in the interphase nucleus mechanistically couples chromatin remodelling and the execution of signalling cascades that mediate gene expression with the combinatorial assembly of the regulatory machinery for biological control. In addition, a mitotic cycle of selective partitioning and sequential restoration of the transcriptional machinery provides a basis for the reassembly of regulatory complexes to render progeny cells competent for phenotypic gene expression. When this intranuclear targeting and localization of regulatory proteins is compromised, diseases, such as cancer, can occur. A detailed understanding of this process will provide further options for diagnosis and treatment.

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Year:  2005        PMID: 15689940      PMCID: PMC1299247          DOI: 10.1038/sj.embor.7400337

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  40 in total

Review 1.  The organization of replication and transcription.

Authors:  P R Cook
Journal:  Science       Date:  1999-06-11       Impact factor: 47.728

2.  RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo.

Authors:  T Misteli; D L Spector
Journal:  Mol Cell       Date:  1999-06       Impact factor: 17.970

3.  Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division.

Authors:  K E Brown; J Baxter; D Graf; M Merkenschlager; A G Fisher
Journal:  Mol Cell       Date:  1999-02       Impact factor: 17.970

4.  Expression of NPAT, a novel substrate of cyclin E-CDK2, promotes S-phase entry.

Authors:  J Zhao; B Dynlacht; T Imai; T Hori; E Harlow
Journal:  Genes Dev       Date:  1998-02-15       Impact factor: 11.361

5.  Identification of a nuclear matrix targeting signal in the leukemia and bone-related AML/CBF-alpha transcription factors.

Authors:  C Zeng; A J van Wijnen; J L Stein; S Meyers; W Sun; L Shopland; J B Lawrence; S Penman; J B Lian; G S Stein; S W Hiebert
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

6.  The human ALL-1/MLL/HRX antigen is predominantly localized in the nucleus of resting and proliferating peripheral blood mononuclear cells.

Authors:  M G Ennas; C Sorio; R Greim; M Nieddu; A Scarpa; S Orlandini; C M Croce; G H Fey; R Marschalek
Journal:  Cancer Res       Date:  1997-05-15       Impact factor: 12.701

7.  Cbfa2 is required for the formation of intra-aortic hematopoietic clusters.

Authors:  T North; T L Gu; T Stacy; Q Wang; L Howard; M Binder; M Marín-Padilla; N A Speck
Journal:  Development       Date:  1999-06       Impact factor: 6.868

8.  Processing of endogenous pre-mRNAs in association with SC-35 domains is gene specific.

Authors:  K P Smith; P T Moen; K L Wydner; J R Coleman; J B Lawrence
Journal:  J Cell Biol       Date:  1999-02-22       Impact factor: 10.539

9.  Association of chromosome territories with the nuclear matrix. Disruption of human chromosome territories correlates with the release of a subset of nuclear matrix proteins.

Authors:  H Ma; A J Siegel; R Berezney
Journal:  J Cell Biol       Date:  1999-08-09       Impact factor: 10.539

10.  Spatial relationship between transcription sites and chromosome territories.

Authors:  P J Verschure; I van Der Kraan; E M Manders; R van Driel
Journal:  J Cell Biol       Date:  1999-10-04       Impact factor: 10.539

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  45 in total

Review 1.  RUNX1-dependent mechanisms in biological control and dysregulation in cancer.

Authors:  Deli Hong; Andrew J Fritz; Jonathan A Gordon; Coralee E Tye; Joseph R Boyd; Kirsten M Tracy; Seth E Frietze; Frances E Carr; Jeffrey A Nickerson; Andre J Van Wijnen; Anthony N Imbalzano; Sayyed K Zaidi; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  J Cell Physiol       Date:  2018-12-04       Impact factor: 6.384

Review 2.  Hdac-mediated control of endochondral and intramembranous ossification.

Authors:  Elizabeth W Bradley; Meghan E McGee-Lawrence; Jennifer J Westendorf
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2011       Impact factor: 1.807

3.  Recruitment and subnuclear distribution of the regulatory machinery during 1alpha,25-dihydroxy vitamin D3-mediated transcriptional upregulation in osteoblasts.

Authors:  Gloria Arriagada; Berta Henriquez; Daniel Moena; Paola Merino; Cinthya Ruiz-Tagle; Jane B Lian; Gary S Stein; Janet L Stein; Martin Montecino
Journal:  J Steroid Biochem Mol Biol       Date:  2010-02-18       Impact factor: 4.292

Review 4.  An architectural genetic and epigenetic perspective.

Authors:  Gary S Stein; Janet L Stein; Andre J van Wijnen; Jane B Lian; Sayyed K Zaidi; Jeffrey A Nickerson; Martin A Montecino; Daniel W Young
Journal:  Integr Biol (Camb)       Date:  2010-12-24       Impact factor: 2.192

5.  Systems biology meets chromatin function: a report on the Fourth Elmau Conference on Nuclear Organization.

Authors:  Christophe Lavelle; Alex Sigal
Journal:  Chromosome Res       Date:  2007-01-26       Impact factor: 5.239

Review 6.  Organization of transcriptional regulatory machinery in nuclear microenvironments: implications for biological control and cancer.

Authors:  Gary S Stein; Jane B Lian; Andre J van Wijnen; Janet L Stein; Amjad Javed; Martin Montecino; Je-Yong Choi; Diana Vradii; Sayyed K Zaidi; Jitesh Pratap; Daniel Young
Journal:  Adv Enzyme Regul       Date:  2007-03-23

7.  Mitotic retention of gene expression patterns by the cell fate-determining transcription factor Runx2.

Authors:  Daniel W Young; Mohammad Q Hassan; Xiao-Qing Yang; Mario Galindo; Amjad Javed; Sayyed K Zaidi; Paul Furcinitti; David Lapointe; Martin Montecino; Jane B Lian; Janet L Stein; Andre J van Wijnen; Gary S Stein
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

8.  Identification of a common subnuclear localization signal.

Authors:  Karim Mekhail; Luis Rivero-Lopez; Ahmad Al-Masri; Caroline Brandon; Mireille Khacho; Stephen Lee
Journal:  Mol Biol Cell       Date:  2007-07-25       Impact factor: 4.138

Review 9.  Transcription-factor-mediated epigenetic control of cell fate and lineage commitment.

Authors:  Gary S Stein; Sayyed K Zaidi; Janet L Stein; Jane B Lian; Andre J van Wijnen; Martin Montecino; Daniel W Young; Amjad Javed; Jitesh Pratap; Je-Yong Choi; Syed A Ali; Sandhya Pande; Mohammad Q Hassan
Journal:  Biochem Cell Biol       Date:  2009-02       Impact factor: 3.626

Review 10.  Nuclear organization mediates cancer-compromised genetic and epigenetic control.

Authors:  Sayyed K Zaidi; Andrew J Fritz; Kirsten M Tracy; Jonathan A Gordon; Coralee E Tye; Joseph Boyd; Andre J Van Wijnen; Jeffrey A Nickerson; Antony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  Adv Biol Regul       Date:  2018-05-09
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