Literature DB >> 15689515

All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin.

Lu Deng1, Eugene S Vysotski, Svetlana V Markova, Zhi-Jie Liu, John Lee, John Rose, Bi-Cheng Wang.   

Abstract

The crystal structures of calcium-loaded apo-aequorin and apo-obelin have been determined at resolutions 1.7A and 2.2 A, respectively. A calcium ion is observed in each of the three EF-hand loops that have the canonical calcium-binding sequence, and each is coordinated in the characteristic pentagonal bipyramidal configuration. The calcium-loaded apo-protein retain the same compact scaffold and overall fold as the unreacted photoproteins containing the bound substrate, 2-hyroperoxycoelenterazine, and also the same as the Ca2+-discharged obelin bound with product, coleneteramide. Nevertheless, there are easily discerned shifts in both helix and loop regions, and the shifts are not the same between the two proteins. It is suggested that these photoproteins to sense Ca2+ concentration transients and to produce their bioluminescence response on the millisecond timescale. A mechanism of intrastructural transmission of the calcium signal is proposed.

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Year:  2005        PMID: 15689515      PMCID: PMC2279293          DOI: 10.1110/ps.041142905

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  36 in total

Review 1.  Classification and evolution of EF-hand proteins.

Authors:  H Kawasaki; S Nakayama; R H Kretsinger
Journal:  Biometals       Date:  1998-12       Impact factor: 2.949

2.  The crystal structure of the photoprotein aequorin at 2.3 A resolution.

Authors:  J F Head; S Inouye; K Teranishi; O Shimomura
Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

3.  Comparative aspects of the calcium-sensitive photoproteins aequorin and obelin.

Authors:  D G Moisescu; C C Ashley; A K Campbell
Journal:  Biochim Biophys Acta       Date:  1975-07-08

Review 4.  Shining the light: the mechanism of the bioluminescence reaction of calcium-binding photoproteins.

Authors:  Y Ohmiya; T Hirano
Journal:  Chem Biol       Date:  1996-05

5.  Recombinant apoaequorin acting as a pseudo-luciferase reports micromolar changes in the endoplasmic reticulum free Ca2+ of intact cells.

Authors:  J M Kendall; M N Badminton; G B Sala-Newby; A K Campbell; C M Rembold
Journal:  Biochem J       Date:  1996-09-01       Impact factor: 3.857

6.  Cloning and sequence analysis of cDNA for the luminescent protein aequorin.

Authors:  S Inouye; M Noguchi; Y Sakaki; Y Takagi; T Miyata; S Iwanaga; T Miyata; F I Tsuji
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Cloning, expression and sequence analysis of cDNA for the Ca(2+)-binding photoprotein, mitrocomin.

Authors:  T F Fagan; Y Ohmiya; J R Blinks; S Inouye; F I Tsuji
Journal:  FEBS Lett       Date:  1993-11-01       Impact factor: 4.124

9.  Extraction, partial purification and properties of obelin, the calcium-activated luminescent protein from the hydroid Obelia geniculata.

Authors:  A K Campbell
Journal:  Biochem J       Date:  1974-11       Impact factor: 3.857

10.  Cloning and sequence analysis of cDNA for the Ca(2+)-activated photoprotein, clytin.

Authors:  S Inouye; F I Tsuji
Journal:  FEBS Lett       Date:  1993-01-11       Impact factor: 4.124

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  13 in total

Review 1.  Protein-protein complexation in bioluminescence.

Authors:  Maxim S Titushin; Yingang Feng; John Lee; Eugene S Vysotski; Zhi-Jie Liu
Journal:  Protein Cell       Date:  2012-01-10       Impact factor: 14.870

2.  Crystal structure of obelin after Ca2+-triggered bioluminescence suggests neutral coelenteramide as the primary excited state.

Authors:  Zhi-Jie Liu; Galina A Stepanyuk; Eugene S Vysotski; John Lee; Svetlana V Markova; Natalia P Malikova; Bi-Cheng Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-08       Impact factor: 11.205

3.  Reaction mechanism of the bioluminescent protein mnemiopsin1 revealed by X-ray crystallography and QM/MM simulations.

Authors:  Maryam Molakarimi; Michael A Gorman; Ammar Mohseni; Zaiddodine Pashandi; Majid Taghdir; Hossein Naderi-Manesh; Reza H Sajedi; Michael W Parker
Journal:  J Biol Chem       Date:  2018-11-12       Impact factor: 5.157

4.  Calcium dependence of aequorin bioluminescence dissected by random mutagenesis.

Authors:  Ludovic Tricoire; Keisuke Tsuzuki; Olivier Courjean; Nathalie Gibelin; Gaëlle Bourout; Jean Rossier; Bertrand Lambolez
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-12       Impact factor: 11.205

5.  Unusual shift in the visible absorption spectrum of an active ctenophore photoprotein elucidated by time-dependent density functional theory.

Authors:  Felix N Tomilin; Anastasia V Rogova; Ludmila P Burakova; Olga N Tchaikovskaya; Pavel V Avramov; Dmitri G Fedorov; Eugene S Vysotski
Journal:  Photochem Photobiol Sci       Date:  2021-04-08       Impact factor: 3.982

6.  The X-ray structure of juvenile hormone diol kinase from the silkworm Bombyx mori.

Authors:  Jingxu Guo; Ronan M Keegan; Daniel J Rigden; Peter T Erskine; Steve P Wood; Sheng Li; Jonathan B Cooper
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-11-25       Impact factor: 1.056

7.  Crystal structure of semisynthetic obelin-v.

Authors:  Marina D Larionova; Lijie Wu; Elena V Eremeeva; Pavel V Natashin; Dmitry V Gulnov; Elena V Nemtseva; Dongsheng Liu; Zhi-Jie Liu; Eugene S Vysotski
Journal:  Protein Sci       Date:  2021-11-29       Impact factor: 6.725

8.  Prediction of calcium-binding sites by combining loop-modeling with machine learning.

Authors:  Tianyun Liu; Russ B Altman
Journal:  BMC Struct Biol       Date:  2009-12-11

9.  Expression, purification and characterization of the secreted luciferase of the copepod Metridia longa from Sf9 insect cells.

Authors:  Galina A Stepanyuk; Hao Xu; Chia-Kuei Wu; Svetlana V Markova; John Lee; Eugene S Vysotski; Bi-Cheng Wang
Journal:  Protein Expr Purif       Date:  2008-06-10       Impact factor: 1.650

10.  Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes.

Authors:  Christine E Schnitzler; Kevin Pang; Meghan L Powers; Adam M Reitzel; Joseph F Ryan; David Simmons; Takashi Tada; Morgan Park; Jyoti Gupta; Shelise Y Brooks; Robert W Blakesley; Shozo Yokoyama; Steven Hd Haddock; Mark Q Martindale; Andreas D Baxevanis
Journal:  BMC Biol       Date:  2012-12-21       Impact factor: 7.431

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