Literature DB >> 15683867

Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase.

Florence Jungo1, Amos Bairoch.   

Abstract

The Tox-Prot program was initiated in order to provide the scientific community a summary of the current knowledge on animal protein toxins. The aim of this program is to systematically annotate all proteins which act as toxins and are produced by venomous and poisonous animals. Venomous animals such as snakes, scorpions, spiders, jellyfish, insects, cone snails, sea anemones, lizards, some fish, and platypus are equipped with a specialized organ to inject venom in their prey. In contrast, poisonous animals such as some fish or worms, lack such organs. Each toxin is annotated according to the quality standards of Swiss-Prot. This means providing a wealth of information that includes the description of the function, domain structure, subcellular location, tissue specificity, variants, similarities to other proteins, keywords, etc. In the framework of this program, particular care has been made to capture what is known on the function and mode of action, posttranslational modifications and 3D structural data which are all relatively abundant in the field of protein toxins. Researchers are welcome to contribute their knowledge to the scientific community by submitting relevant findings to Swiss-Prot concerning toxins at Tox-Prot@isb-sib.ch. More information on Tox-Prot can be found at http://www.expasy.org/sprot/tox-prot.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15683867     DOI: 10.1016/j.toxicon.2004.10.018

Source DB:  PubMed          Journal:  Toxicon        ISSN: 0041-0101            Impact factor:   3.033


  40 in total

1.  Proteome of Hydra nematocyst.

Authors:  Prakash G Balasubramanian; Anna Beckmann; Uwe Warnken; Martina Schnölzer; Andreas Schüler; Erich Bornberg-Bauer; Thomas W Holstein; Suat Ozbek
Journal:  J Biol Chem       Date:  2012-01-30       Impact factor: 5.157

2.  A limited role for gene duplications in the evolution of platypus venom.

Authors:  Emily S W Wong; Anthony T Papenfuss; Camilla M Whittington; Wesley C Warren; Katherine Belov
Journal:  Mol Biol Evol       Date:  2011-08-03       Impact factor: 16.240

3.  Tentacle Transcriptomes of the Speckled Anemone (Actiniaria: Actiniidae: Oulactis sp.): Venom-Related Components and Their Domain Structure.

Authors:  Michela L Mitchell; Gerry Q Tonkin-Hill; Rodrigo A V Morales; Anthony W Purcell; Anthony T Papenfuss; Raymond S Norton
Journal:  Mar Biotechnol (NY)       Date:  2020-01-24       Impact factor: 3.619

4.  Are there unequivocal criteria to label a given protein as a toxin? Permissive versus conservative annotation processes.

Authors:  Yves Terrat; Frédéric Ducancel
Journal:  Genome Biol       Date:  2013       Impact factor: 13.583

5.  The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data.

Authors:  Florence Jungo; Lydie Bougueleret; Ioannis Xenarios; Sylvain Poux
Journal:  Toxicon       Date:  2012-03-23       Impact factor: 3.033

Review 6.  Integrating the discovery pipeline for novel compounds targeting ion channels.

Authors:  Grzegorz Bulaj
Journal:  Curr Opin Chem Biol       Date:  2008-08-03       Impact factor: 8.822

7.  A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes.

Authors:  Guy Naamati; Manor Askenazi; Michal Linial
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

8.  ArachnoServer: a database of protein toxins from spiders.

Authors:  David L A Wood; Tomas Miljenović; Shuzhi Cai; Robert J Raven; Quentin Kaas; Pierre Escoubas; Volker Herzig; David Wilson; Glenn F King
Journal:  BMC Genomics       Date:  2009-08-13       Impact factor: 3.969

9.  Novel venom gene discovery in the platypus.

Authors:  Camilla M Whittington; Anthony T Papenfuss; Devin P Locke; Elaine R Mardis; Richard K Wilson; Sahar Abubucker; Makedonka Mitreva; Emily S W Wong; Arthur L Hsu; Philip W Kuchel; Katherine Belov; Wesley C Warren
Journal:  Genome Biol       Date:  2010-09-29       Impact factor: 13.583

10.  ClanTox: a classifier of short animal toxins.

Authors:  Guy Naamati; Manor Askenazi; Michal Linial
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.