Literature DB >> 15680982

The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer.

Joachim Frank1, Jayati Sengupta, Haixiao Gao, Wen Li, Mikel Valle, Andrey Zavialov, Måns Ehrenberg.   

Abstract

Translation is the process by which the genetic information contained in mRNA is used to link amino acids in a predetermined sequential order into a polypeptide chain, which then folds into a protein. Transfer RNAs (tRNAs) are the adapter molecules designed to provide the "lookup" from codons to amino acids. Cryo-EM has provided evidence that the ribosome, as a molecular machine, undergoes many structural changes during translation. Recent findings show that the tRNA structure itself undergoes large conformational changes as well, and that the decoding process must be seen as a complex dynamic interplay between tRNA and the ribosome.

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Year:  2005        PMID: 15680982     DOI: 10.1016/j.febslet.2004.10.105

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  44 in total

1.  Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways.

Authors:  Paul C Whitford; Peter Geggier; Roger B Altman; Scott C Blanchard; José N Onuchic; Karissa Y Sanbonmatsu
Journal:  RNA       Date:  2010-04-28       Impact factor: 4.942

2.  Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

Authors:  Peter Geggier; Richa Dave; Michael B Feldman; Daniel S Terry; Roger B Altman; James B Munro; Scott C Blanchard
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

3.  Codon-dependent tRNA fluctuations monitored with fluorescence polarization.

Authors:  Padmaja P Mishra; Mohd Tanvir Qureshi; Wenhui Ren; Tae-Hee Lee
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

4.  Simulating movement of tRNA into the ribosome during decoding.

Authors:  Kevin Y Sanbonmatsu; Simpson Joseph; Chang-Shung Tung
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-25       Impact factor: 11.205

5.  Participation of the tRNA A76 hydroxyl groups throughout translation.

Authors:  Joshua S Weinger; Scott A Strobel
Journal:  Biochemistry       Date:  2006-05-16       Impact factor: 3.162

Review 6.  Is tRNA only a translation factor or also a regulator of other processes?

Authors:  Grzegorz Wegrzyn; Alicja Wegrzyn
Journal:  J Appl Genet       Date:  2008       Impact factor: 3.240

7.  The role of fluctuations in tRNA selection by the ribosome.

Authors:  Tae-Hee Lee; Scott C Blanchard; Harold D Kim; Joseph D Puglisi; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-15       Impact factor: 11.205

8.  The process of mRNA-tRNA translocation.

Authors:  Joachim Frank; Haixiao Gao; Jayati Sengupta; Ning Gao; Derek J Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

9.  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Authors:  Jan-Christian Schuette; Frank V Murphy; Ann C Kelley; John R Weir; Jan Giesebrecht; Sean R Connell; Justus Loerke; Thorsten Mielke; Wei Zhang; Pawel A Penczek; V Ramakrishnan; Christian M T Spahn
Journal:  EMBO J       Date:  2009-02-19       Impact factor: 11.598

10.  Structure of the mammalian 80S ribosome at 8.7 A resolution.

Authors:  Preethi Chandramouli; Maya Topf; Jean-François Ménétret; Narayanan Eswar; Jamie J Cannone; Robin R Gutell; Andrej Sali; Christopher W Akey
Journal:  Structure       Date:  2008-04       Impact factor: 5.006

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