Literature DB >> 15680762

One-component systems dominate signal transduction in prokaryotes.

Luke E Ulrich1, Eugene V Koonin, Igor B Zhulin.   

Abstract

Two-component systems that link environmental signals to cellular responses are viewed as the primary mode of signal transduction in prokaryotes. By analyzing information encoded by 145 prokaryotic genomes, we found that the majority of signal transduction systems consist of a single protein that contains input and output domains but lacks phosphotransfer domains typical of two-component systems. One-component systems are evolutionarily older, more widely distributed among bacteria and archaea, and display a greater diversity of domains than two-component systems.

Mesh:

Year:  2005        PMID: 15680762      PMCID: PMC2756188          DOI: 10.1016/j.tim.2004.12.006

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  28 in total

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2.  SMART 4.0: towards genomic data integration.

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Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Scaling laws in the functional content of genomes.

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Journal:  Trends Genet       Date:  2003-09       Impact factor: 11.639

4.  Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain.

Authors:  Ralf Paul; Stefan Weiser; Nicholas C Amiot; Carmen Chan; Tilman Schirmer; Bernd Giese; Urs Jenal
Journal:  Genes Dev       Date:  2004-03-15       Impact factor: 11.361

5.  Trends between gene content and genome size in prokaryotic species with larger genomes.

Authors:  Konstantinos T Konstantinidis; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-18       Impact factor: 11.205

Review 6.  Communication modules in bacterial signaling proteins.

Authors:  J S Parkinson; E C Kofoid
Journal:  Annu Rev Genet       Date:  1992       Impact factor: 16.830

Review 7.  FNR and its role in oxygen-regulated gene expression in Escherichia coli.

Authors:  S Spiro; J R Guest
Journal:  FEMS Microbiol Rev       Date:  1990-08       Impact factor: 16.408

8.  Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR.

Authors:  Anita Changela; Kui Chen; Yi Xue; Jackie Holschen; Caryn E Outten; Thomas V O'Halloran; Alfonso Mondragón
Journal:  Science       Date:  2003-09-05       Impact factor: 47.728

9.  The Pfam protein families database.

Authors:  Alex Bateman; Lachlan Coin; Richard Durbin; Robert D Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L L Sonnhammer; David J Studholme; Corin Yeats; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

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  190 in total

1.  The LovK-LovR two-component system is a regulator of the general stress pathway in Caulobacter crescentus.

Authors:  Robert Foreman; Aretha Fiebig; Sean Crosson
Journal:  J Bacteriol       Date:  2012-03-09       Impact factor: 3.490

2.  The S-helix determines the signal in a Tsr receptor/adenylyl cyclase reporter.

Authors:  Karin Winkler; Anita Schultz; Joachim E Schultz
Journal:  J Biol Chem       Date:  2012-03-15       Impact factor: 5.157

3.  Catabolite repression of the TodS/TodT two-component system and effector-dependent transphosphorylation of TodT as the basis for toluene dioxygenase catabolic pathway control.

Authors:  Andreas Busch; Jesús Lacal; Hortencia Silva-Jímenez; Tino Krell; Juan L Ramos
Journal:  J Bacteriol       Date:  2010-06-11       Impact factor: 3.490

4.  New insights into the signaling mechanism of the pH-responsive, membrane-integrated transcriptional activator CadC of Escherichia coli.

Authors:  Ina Haneburger; Andreas Eichinger; Arne Skerra; Kirsten Jung
Journal:  J Biol Chem       Date:  2011-01-07       Impact factor: 5.157

Review 5.  Identification of ligands for bacterial sensor proteins.

Authors:  Matilde Fernández; Bertrand Morel; Andrés Corral-Lugo; Miriam Rico-Jiménez; David Martín-Mora; Diana López-Farfán; José Antonio Reyes-Darias; Miguel A Matilla; Álvaro Ortega; Tino Krell
Journal:  Curr Genet       Date:  2015-10-28       Impact factor: 3.886

Review 6.  (Actino)Bacterial "intelligence": using comparative genomics to unravel the information processing capacities of microbes.

Authors:  Daniela Pinto; Thorsten Mascher
Journal:  Curr Genet       Date:  2016-02-06       Impact factor: 3.886

7.  Structural characterization of GntR/HutC family signaling domain.

Authors:  Marina Gorelik; Vladimir V Lunin; Tatiana Skarina; Alexei Savchenko
Journal:  Protein Sci       Date:  2006-05-02       Impact factor: 6.725

8.  Distribution, structure and diversity of "bacterial" genes encoding two-component proteins in the Euryarchaeota.

Authors:  Mark K Ashby
Journal:  Archaea       Date:  2006-08       Impact factor: 3.273

9.  Bioinformatics and experimental analysis of proteins of two-component systems in Myxococcus xanthus.

Authors:  Xingqi Shi; Sigrun Wegener-Feldbrügge; Stuart Huntley; Nils Hamann; Reiner Hedderich; Lotte Søgaard-Andersen
Journal:  J Bacteriol       Date:  2007-11-09       Impact factor: 3.490

10.  The GAF-like-domain-containing transcriptional regulator DfdR is a sensor protein for dibenzofuran and several hydrophobic aromatic compounds.

Authors:  Toshiya Iida; Taro Waki; Kaoru Nakamura; Yuki Mukouzaka; Toshiaki Kudo
Journal:  J Bacteriol       Date:  2008-10-24       Impact factor: 3.490

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