Literature DB >> 15664893

Energy landscapes and solved protein-folding problems.

Peter G Wolynes1.   

Abstract

Energy-landscape theory has led to much progress in protein folding kinetics, protein structure prediction and protein design. Funnel landscapes describe protein folding and binding and explain how protein topology determines kinetics. Landscape-optimized energy functions based on bioinformatic input have been used to correctly predict low-resolution protein structures and also to design novel proteins automatically.

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Year:  2005        PMID: 15664893     DOI: 10.1098/rsta.2004.1502

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  43 in total

1.  Emerging of Stochastic Dynamical Equalities and Steady State Thermodynamics from Darwinian Dynamics.

Authors:  P Ao
Journal:  Commun Theor Phys       Date:  2008-05-15       Impact factor: 1.968

2.  Distributions of experimental protein structures on coarse-grained free energy landscapes.

Authors:  Kannan Sankar; Jie Liu; Yuan Wang; Robert L Jernigan
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

3.  Predictive energy landscapes for folding membrane protein assemblies.

Authors:  Ha H Truong; Bobby L Kim; Nicholas P Schafer; Peter G Wolynes
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

4.  Role of single-point mutations and deletions on transition temperatures in ideal proteinogenic heteropolymer chains in the gas phase.

Authors:  L Olivares-Quiroz
Journal:  Eur Biophys J       Date:  2016-01-27       Impact factor: 1.733

5.  Molecular dynamics and protein function.

Authors:  M Karplus; J Kuriyan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

Review 6.  GroEL-mediated protein folding: making the impossible, possible.

Authors:  Zong Lin; Hays S Rye
Journal:  Crit Rev Biochem Mol Biol       Date:  2006 Jul-Aug       Impact factor: 8.250

7.  Further evidence for the absence of polyproline II stretch in the XAO peptide.

Authors:  Joanna Makowska; Sylwia Rodziewicz-Motowidlo; Katarzyna Baginska; Mariusz Makowski; Jorge A Vila; Adam Liwo; Lech Chmurzynski; Harold A Scheraga
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

8.  Protein folding is slaved to solvent motions.

Authors:  H Frauenfelder; P W Fenimore; G Chen; B H McMahon
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

Review 9.  Protein aggregation in silico.

Authors:  Troy Cellmer; Dusan Bratko; John M Prausnitz; Harvey W Blanch
Journal:  Trends Biotechnol       Date:  2007-04-12       Impact factor: 19.536

10.  Distinguishing crystal-like amyloid fibrils and glass-like amorphous aggregates from their kinetics of formation.

Authors:  Yuichi Yoshimura; Yuxi Lin; Hisashi Yagi; Young-Ho Lee; Hiroki Kitayama; Kazumasa Sakurai; Masatomo So; Hirotsugu Ogi; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

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