Literature DB >> 15664888

The energy landscape as a unifying theme in molecular science.

David J Wales1.   

Abstract

The potential energy surface (PES) underlies most calculations of structure, dynamics and thermodynamics in molecular science. In this contribution connections between the topology of the PES and observable properties are developed for a coarse-grained model of virus capsid self-assembly. The model predicts that a thermodynamically stable, kinetically accessible icosahedral shell exists for pentameric building blocks of the right shape: not too flat and not too spiky. The structure of the corresponding PES is probably common to other systems where directed searches avoid Levinthal's paradox, such as 'magic number' clusters, protein folding and crystallization.

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Year:  2005        PMID: 15664888     DOI: 10.1098/rsta.2004.1497

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  28 in total

1.  Langevin dynamics simulation of polymer-assisted virus-like assembly.

Authors:  J P Mahalik; M Muthukumar
Journal:  J Chem Phys       Date:  2012-04-07       Impact factor: 3.488

2.  Exploring the paths of (virus) assembly.

Authors:  Paul Moisant; Henry Neeman; Adam Zlotnick
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

3.  Classical nucleation theory of virus capsids.

Authors:  Roya Zandi; Paul van der Schoot; David Reguera; Willem Kegel; Howard Reiss
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

4.  Distinguishing reversible from irreversible virus capsid assembly.

Authors:  Adam Zlotnick
Journal:  J Mol Biol       Date:  2006-11-11       Impact factor: 5.469

5.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

Review 6.  Ten reasons to exclude viruses from the tree of life.

Authors:  David Moreira; Purificación López-García
Journal:  Nat Rev Microbiol       Date:  2009-03-09       Impact factor: 60.633

7.  Simulated self-assembly of the HIV-1 capsid: protein shape and native contacts are sufficient for two-dimensional lattice formation.

Authors:  Bo Chen; Robert Tycko
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

8.  Simulations show that virus assembly and budding are facilitated by membrane microdomains.

Authors:  Teresa Ruiz-Herrero; Michael F Hagan
Journal:  Biophys J       Date:  2015-02-03       Impact factor: 4.033

9.  Using Markov state models to study self-assembly.

Authors:  Matthew R Perkett; Michael F Hagan
Journal:  J Chem Phys       Date:  2014-06-07       Impact factor: 3.488

10.  Phage P22 procapsids equilibrate with free coat protein subunits.

Authors:  Kristin N Parent; Margaret M Suhanovsky; Carolyn M Teschke
Journal:  J Mol Biol       Date:  2006-10-04       Impact factor: 5.469

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